102 void updateMembers_()
override;
119 void checkSolution_(
const ConsensusMap& cons_map)
const;
125 void inferMoreEdges_(PairsType& edges,
Map<
Size, std::set<CmpInfo_> >& feature_adducts);
128 void printEdgesOfConnectedFeatures_(
Size idx_1,
Size idx_2,
const PairsType& feature_relation);
136 inline bool intensityFilterPassed_(
const Int q1,
const Int q2,
const Compomer& cmp,
const FeatureType& f1,
const FeatureType& f2);
144 bool chargeTestworthy_(
const Int feature_charge,
const Int putative_charge,
const bool other_unchanged)
const;
ILPDCWrapper::PairsType PairsType
Definition: FeatureDeconvolution.h:70
Adduct::AdductsType AdductsType
Definition: MassExplainer.h:60
Int verbose_level_
amount of debug information displayed
Definition: FeatureDeconvolution.h:157
An LC-MS feature.
Definition: Feature.h:70
FeatureMapType::FeatureType::CoordinateType CoordinateType
Definition: FeatureDeconvolution.h:69
bool enable_intensity_filter_
status of intensity filter for edges
Definition: FeatureDeconvolution.h:153
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Feature FeatureType
Definition: FeatureDeconvolution.h:67
An algorithm to decharge features (i.e. as found by FeatureFinder).
Definition: FeatureDeconvolution.h:59
Map< Size, String > map_label_
labeling table
Definition: FeatureDeconvolution.h:149
Map< String, Size > map_label_inverse_
labeling table inverse
Definition: FeatureDeconvolution.h:151
CHARGEMODE
Definition: FeatureDeconvolution.h:64
A container for features.
Definition: FeatureMap.h:95
MassExplainer::AdductsType potential_adducts_
List of adducts used to explain mass differences.
Definition: FeatureDeconvolution.h:147
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:50
CHARGEMODE q_try_
status of charge discovery
Definition: FeatureDeconvolution.h:155
DPosition< 2 > ClusterPointType
Definition: FeatureDeconvolution.h:68
FeatureMap FeatureMapType
Definition: FeatureDeconvolution.h:66
std::vector< ChargePair > PairsType
Definition: ILPDCWrapper.h:55
Definition: FeatureDeconvolution.h:64
A container for consensus elements.
Definition: ConsensusMap.h:79
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:91
Holds information on an edge connecting two features from a (putative) charge ladder.
Definition: Compomer.h:58
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46