128 const String& input_filename =
"inputfile",
129 bool ms1_scores =
false,
131 bool uis_scores =
false) :
132 output_filename_(output_filename),
133 input_filename_(input_filename),
135 doWrite_(!output_filename.empty()),
136 use_ms1_traces_(ms1_scores),
138 enable_uis_scoring_(uis_scores)
141 bool isActive()
const;
160 String getScore(
const Feature& feature, std::string score_name)
const;
173 std::vector<String> getSeparateScore(
const Feature& feature, std::string score_name)
const;
206 void writeLines(
const std::vector<String>& to_osw_output);
Definition: TransitionExperiment.h:46
bool sonar_
Definition: OpenSwathOSWWriter.h:122
OPENMS_UINT64_TYPE UInt64
Unsigned integer type (64bit)
Definition: Types.h:77
Definition: TransitionExperiment.h:149
String output_filename_
Definition: OpenSwathOSWWriter.h:117
An LC-MS feature.
Definition: Feature.h:70
String input_filename_
Definition: OpenSwathOSWWriter.h:118
OpenMS::UInt64 run_id_
Definition: OpenSwathOSWWriter.h:119
A generator for unique ids.
Definition: UniqueIdGenerator.h:59
A container for features.
Definition: FeatureMap.h:95
OpenSwathOSWWriter(const String &output_filename, const String &input_filename="inputfile", bool ms1_scores=false, bool sonar=false, bool uis_scores=false)
Definition: OpenSwathOSWWriter.h:127
Class to write out an OpenSwath OSW SQLite output (PyProphet input).
Definition: OpenSwathOSWWriter.h:115
bool enable_uis_scoring_
Definition: OpenSwathOSWWriter.h:123
A more convenient string class.
Definition: String.h:58
bool use_ms1_traces_
Definition: OpenSwathOSWWriter.h:121
bool doWrite_
Definition: OpenSwathOSWWriter.h:120
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46