43 #include <OpenMS/OpenMSConfig.h> 75 typedef std::set<FeatureHandle, FeatureHandle::IndexLess>
HandleSetType;
84 std::binary_function<ConsensusFeature, ConsensusFeature, bool>
93 return left.
size() < right;
98 return left < right.
size();
110 std::binary_function<ConsensusFeature, ConsensusFeature, bool>
215 void insert(
const HandleSetType& handle_set);
234 const HandleSetType& getFeatures()
const;
237 std::vector<FeatureHandle> getFeatureList()
const;
240 void setFeatures(HandleSetType
h);
261 void computeConsensus();
272 void computeMonoisotopicConsensus();
287 void computeDechargeConsensus(
const FeatureMap& fm,
bool intensity_weighted_averaging =
false);
296 void addRatio(
const Ratio& r);
305 void setRatios(std::vector<Ratio>& rs);
310 std::vector<Ratio> getRatios()
const;
315 std::vector<Ratio>& getRatios();
321 const_iterator begin()
const;
325 const_iterator end()
const;
329 const_reverse_iterator rbegin()
const;
331 reverse_iterator rbegin();
333 const_reverse_iterator rend()
const;
335 reverse_iterator rend();
Compare by size(), the number of consensus elements.
Definition: ConsensusFeature.h:83
bool operator()(UInt64 const &left, ConsensusFeature const &right) const
Definition: ConsensusFeature.h:96
Ratio()
Definition: ConsensusFeature.h:122
double ratio_value_
Definition: ConsensusFeature.h:150
OPENMS_UINT64_TYPE UInt64
Unsigned integer type (64bit)
Definition: Types.h:77
Representation of a Peak2D, RichPeak2D or Feature .
Definition: FeatureHandle.h:57
slim struct to feed the need for systematically storing of ratios (
Definition: ConsensusFeature.h:120
const_iterator end() const
HandleSetType::iterator iterator
Definition: ConsensusFeature.h:77
A consensus feature spanning multiple LC-MS/MS experiments.
Definition: ConsensusFeature.h:69
String numerator_ref_
Definition: ConsensusFeature.h:152
A basic LC-MS feature.
Definition: BaseFeature.h:56
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Ratio & operator=(const Ratio &rhs)
Definition: ConsensusFeature.h:138
std::set< FeatureHandle, FeatureHandle::IndexLess > HandleSetType
Type definitions.
Definition: ConsensusFeature.h:75
std::vector< String > description_
Definition: ConsensusFeature.h:153
A container for features.
Definition: FeatureMap.h:95
Comparator by map and unique id.
Definition: FeatureHandle.h:140
bool operator()(const UInt64 &left, const UInt64 &right) const
Definition: ConsensusFeature.h:101
const_iterator begin() const
HandleSetType::reverse_iterator reverse_iterator
Definition: ConsensusFeature.h:79
bool operator()(ConsensusFeature const &left, ConsensusFeature const &right) const
Definition: ConsensusFeature.h:86
bool operator()(ConsensusFeature const &left, UInt64 const &right) const
Definition: ConsensusFeature.h:91
Compare by the sets of consensus elements (lexicographically)
Definition: ConsensusFeature.h:109
A more convenient string class.
Definition: String.h:58
bool operator()(ConsensusFeature const &left, ConsensusFeature const &right) const
Definition: ConsensusFeature.h:112
A 2-dimensional raw data point or peak.
Definition: Peak2D.h:54
String denominator_ref_
Definition: ConsensusFeature.h:151
HandleSetType::const_reverse_iterator const_reverse_iterator
Definition: ConsensusFeature.h:78
std::vector< Ratio > ratios_
Definition: ConsensusFeature.h:345
virtual ~Ratio()
Definition: ConsensusFeature.h:134
Ratio(const Ratio &rhs)
Definition: ConsensusFeature.h:126
HandleSetType handles_
Definition: ConsensusFeature.h:344
std::ostream & operator<<(std::ostream &os, const AccurateMassSearchResult &amsr)
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
HandleSetType::const_iterator const_iterator
Definition: ConsensusFeature.h:76