OpenMS  2.5.0
Class Index
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  _  
MoleculeQueryMatch (OpenMS::IdentificationDataInternal)   
MorpheusScore (OpenMS)   
_Alloc_base (KDTree)   MorphologicalFilter (OpenMS)   
_Base_iterator (KDTree)   MRMAssay (OpenMS)   
_Bracket_accessor (KDTree)   MRMBatchFeatureSelector (OpenMS)   
_Iterator (KDTree)   MRMDecoy (OpenMS)   
_Node (KDTree)   MRMFeature (OpenMS)   
_Node_base (KDTree)   MRMFeatureFilter (OpenMS)   
_Node_compare (KDTree)   MRMFeatureFinderScoring (OpenMS)   
_Region (KDTree)   MRMFeatureOpenMS (OpenMS)   
  a  
MRMFeaturePicker (OpenMS)   
MRMFeaturePickerFile (OpenMS)   
AAcid_ (seqan)   MRMFeatureQC (OpenMS)   
AAIndex (OpenMS)   MRMFeatureQCFile (OpenMS)   
AASequence (OpenMS)   MRMFeatureSelector (OpenMS)   
OPXLDataStructs::AASeqWithMass (OpenMS)   MRMFeatureSelector_test (OpenMS)   
OPXLDataStructs::AASeqWithMassComparator (OpenMS)   MRMFeatureSelectorQMIP (OpenMS)   
FuzzyStringComparator::AbortComparison (OpenMS)   MRMFeatureSelectorScore (OpenMS)   
AbsoluteQuantitation (OpenMS)   MRMFragmentSelection (OpenMS)   
AbsoluteQuantitationMethod (OpenMS)   MRMIonSeries (OpenMS)   
AbsoluteQuantitationMethodFile (OpenMS)   MRMMapping (OpenMS)   
AbsoluteQuantitationStandards (OpenMS)   MRMRTNormalizer (OpenMS)   
AbsoluteQuantitationStandardsFile (OpenMS)   MRMScoring (OpenSwath)   
SiriusMSFile::AccessionInfo (OpenMS)   MRMTransitionGroup (OpenMS)   
AccurateMassSearchEngine (OpenMS)   MRMTransitionGroupPicker (OpenMS)   
AccurateMassSearchResult (OpenMS)   MS1FeatureMerger (OpenMS)   
Acquisition (OpenMS)   MS1Signal (OpenMS)   
AcquisitionInfo (OpenMS)   MS2ConsensusSpectrum (OpenMS)   
AcquisitionInfoVisualizer (OpenMS)   MS2Feature (OpenMS)   
AcquisitionVisualizer (OpenMS)   MS2File (OpenMS)   
AcqusHandler (OpenMS::Internal)   MS2Fragment (OpenMS)   
AdaptedIdentity (seqan)   Ms2IdentificationRate (OpenMS)   
Adduct (OpenMS)   MS2Info (OpenMS)   
AdductInfo (OpenMS)   Ms2SpectrumStats (OpenMS)   
MSstatsFile::AggregatedConsensusInfo (OpenMS)   MSChromatogram (OpenMS)   
AhoCorasickAmbiguous (OpenMS)   MSDataAggregatingConsumer (OpenMS)   
always_true (KDTree)   MSDataCachedConsumer (OpenMS)   
PepXMLFile::AminoAcidModification (OpenMS)   MSDataChainingConsumer (OpenMS)   
MzIdentMLDOMHandler::AnalysisSoftware (OpenMS::Internal)   MSDataSqlConsumer (OpenMS)   
MSQuantifications::AnalysisSummary (OpenMS)   MSDataStoringConsumer (OpenMS)   
NucleicAcidSearchEngine::AnnotatedHit   MSDataTransformingConsumer (OpenMS)   
SimpleSearchEngineAlgorithm::AnnotatedHit_ (OpenMS)   MSDataWritingConsumer (OpenMS)   
Annotation1DCaret (OpenMS)   ProteinResolver::MSDGroup (OpenMS)   
Annotation1DDistanceItem (OpenMS)   MSExperiment (OpenMS)   
Annotation1DItem (OpenMS)   ExperimentalDesign::MSFileSectionEntry (OpenMS)   
Annotation1DPeakItem (OpenMS)   MsInspectFile (OpenMS)   
Annotation1DTextItem (OpenMS)   MSNumpressCoder (OpenMS)   
Annotations1DContainer (OpenMS)   MSPeak (OpenMS)   
AnnotationStatistics (OpenMS)   MSPFile (OpenMS)   
AppliedProcessingStep (OpenMS::IdentificationDataInternal)   MSPGenericFile (OpenMS)   
AreaIterator (OpenMS::Internal)   MSPGenericFile_friend (OpenMS)   
AScore (OpenMS)   MSQuantifications (OpenMS)   
MSQuantifications::Assay (OpenMS)   MSSim (OpenMS)   
AsymmetricStatistics (OpenMS::Math)   MSSpectrum (OpenMS)   
QcMLFile::Attachment (OpenMS)   MSstatsFile (OpenMS)   
AverageLinkage (OpenMS)   MSstatsFile::MSstatsLine_ (OpenMS)   
AveragePosition (OpenMS::Math)   MSstatsFile::MSstatsTMTLine_ (OpenMS)   
AxisPainter (OpenMS)   MultiGradient (OpenMS)   
AxisTickCalculator (OpenMS)   MultiGradientSelector (OpenMS)   
AxisWidget (OpenMS)   MultiplexClustering (OpenMS)   
  b  
MultiplexDeltaMasses (OpenMS)   
MultiplexDeltaMassesGenerator (OpenMS)   
BackgroundControl (OpenMS)   MultiplexClustering::MultiplexDistance (OpenMS)   
BackgroundIntensityBin (OpenMS)   MultiplexFilteredMSExperiment (OpenMS)   
Base64 (OpenMS)   MultiplexFilteredPeak (OpenMS)   
BaseException (OpenMS::Exception)   MultiplexFiltering (OpenMS)   
BaseFeature (OpenMS)   MultiplexFilteringCentroided (OpenMS)   
BaseGroupFinder (OpenMS)   MultiplexFilteringProfile (OpenMS)   
BaseLabeler (OpenMS)   MultiplexIsotopicPeakPattern (OpenMS)   
BaseModel (OpenMS)   MultiplexSatelliteCentroided (OpenMS)   
BaseSuperimposer (OpenMS)   MultiplexSatelliteProfile (OpenMS)   
BaseVisualizer (OpenMS)   mySqrt (OpenSwath)   
BaseVisualizerGUI (OpenMS)   MzCalibration (OpenMS)   
BasicProteinInferenceAlgorithm (OpenMS)   MzDataFile (OpenMS)   
BasicStatistics (OpenMS::Math)   MzDataHandler (OpenMS::Internal)   
BayesianProteinInferenceAlgorithm (OpenMS)   MzDataValidator (OpenMS::Internal)   
BernNorm (OpenMS)   MzIdentMLDOMHandler (OpenMS::Internal)   
BiGaussFitter1D (OpenMS)   MzIdentMLFile (OpenMS)   
BiGaussModel (OpenMS)   MzIdentMLHandler (OpenMS::Internal)   
BilinearInterpolation (OpenMS::Math)   MzIdentMLValidator (OpenMS::Internal)   
MzMLHandlerHelper::BinaryData (OpenMS::Internal)   MSChromatogram::MZLess (OpenMS)   
BinaryDataArray (OpenMS::Interfaces)   Peak1D::MZLess (OpenMS)   
BinaryTreeNode (OpenMS)   Peak2D::MZLess (OpenMS)   
EnzymaticDigestionLogModel::BindingSite_ (OpenMS)   MzMLFile (OpenMS)   
BinnedSharedPeakCount (OpenMS)   MzMLHandler (OpenMS::Internal)   
BinnedSpectralContrastAngle (OpenMS)   MzMLHandlerHelper (OpenMS::Internal)   
BinnedSpectrum (OpenMS)   MzMLSpectrumDecoder (OpenMS)   
TargetedSpectraExtractor::BinnedSpectrumComparator (OpenMS)   MzMLSqliteHandler (OpenMS::Internal)   
BinnedSpectrumCompareFunctor (OpenMS)   MzMLSqliteSwathHandler (OpenMS::Internal)   
BinnedSumAgreeingIntensities (OpenMS)   MzMLSwathFileConsumer (OpenMS)   
BitsPerValue< AAcid > (seqan)   MzMLValidator (OpenMS::Internal)   
BK_PrecPolicy (OpenMS::StringConversions)   MzQuantMLFile (OpenMS)   
FeatureFinderAlgorithmIsotopeWavelet::BoxElement (OpenMS)   MzQuantMLHandler (OpenMS::Internal)   
IsotopeWaveletTransform::BoxElement (OpenMS)   MzQuantMLValidator (OpenMS::Internal)   
BSpline (eol_bspline)   MzTab (OpenMS)   
BSpline2d (OpenMS)   MzTabAssayMetaData (OpenMS)   
BufferOverflow (OpenMS::Exception)   MzTabBoolean (OpenMS)   
Bzip2Ifstream (OpenMS)   MzTabContactMetaData (OpenMS)   
Bzip2InputStream (OpenMS)   MzTabCVMetaData (OpenMS)   
  c  
MzTabDouble (OpenMS)   
MzTabDoubleList (OpenMS)   
CachedmzML (OpenMS)   MzTabFile (OpenMS)   
CachedMzMLHandler (OpenMS::Internal)   MzTabInstrumentMetaData (OpenMS)   
CachedSwathFileConsumer (OpenMS)   MzTabInteger (OpenMS)   
CalibrationData (OpenMS)   MzTabIntegerList (OpenMS)   
CentroidData (OpenMS)   MzTabMetaData (OpenMS)   
CentroidPeak (OpenMS)   MzTabModification (OpenMS)   
ItraqConstants::ChannelInfo (OpenMS)   MzTabModificationList (OpenMS)   
IsotopeCluster::ChargedIndexSet (OpenMS)   MzTabModificationMetaData (OpenMS)   
ChargePair (OpenMS)   MzTabMSRunMetaData (OpenMS)   
Chromatogram (OpenMS::Interfaces)   MzTabNucleicAcidSectionRow (OpenMS)   
MzMLHandler::ChromatogramData (OpenMS::Internal)   MzTabNullAbleBase (OpenMS)   
ChromatogramExtractor (OpenMS)   MzTabNullAbleInterface (OpenMS)   
ChromatogramExtractorAlgorithm (OpenMS)   MzTabNullNaNAndInfAbleBase (OpenMS)   
ChromatogramMeta (OpenMS::Interfaces)   MzTabNullNaNAndInfAbleInterface (OpenMS)   
ChromatogramPeak (OpenMS)   MzTabOligonucleotideSectionRow (OpenMS)   
ChromatogramSettings (OpenMS)   MzTabOSMSectionRow (OpenMS)   
ChromatogramTools (OpenMS)   MzTabParameter (OpenMS)   
ChromeleonFile (OpenMS)   MzTabParameterList (OpenMS)   
ChromExtractParams (OpenMS)   MzTabPeptideSectionRow (OpenMS)   
Citation (OpenMS)   MzTabProteinSectionRow (OpenMS)   
EnzymaticDigestionLogModel::CleavageModel_ (OpenMS)   MzTabPSMSectionRow (OpenMS)   
OPXLDataStructs::CLSMScoreComparator (OpenMS)   MzTabSampleMetaData (OpenMS)   
ClusterAnalyzer (OpenMS)   MzTabSmallMoleculeSectionRow (OpenMS)   
ClusteredMS2ConsensusSpectrum (OpenMS)   MzTabSoftwareMetaData (OpenMS)   
ClusterFunctor (OpenMS)   MzTabSpectraRef (OpenMS)   
ClusterHierarchical (OpenMS)   MzTabString (OpenMS)   
ClusteringGrid (OpenMS)   MzTabStringList (OpenMS)   
ClusterProxyKD (OpenMS)   MzTabStudyVariableMetaData (OpenMS)   
CmpHypothesesByScore (OpenMS)   MZTrafoModel (OpenMS)   
CmpMassTraceByMZ (OpenMS)   MzXMLFile (OpenMS)   
CoarseIsotopePatternGenerator (OpenMS)   MzXMLHandler (OpenMS::Internal)   
ColorSelector (OpenMS)   
  n  
ConsensusMap::ColumnHeader (OpenMS)   
TargetedSpectraExtractor::Comparator (OpenMS)   NASequence (OpenMS)   
MapAlignmentAlgorithmSpectrumAlignment::Compare (OpenMS)   SplineInterpolatedPeaks::Navigator (OpenMS)   
AccurateMassSearchEngine::CompareEntryAndMass_ (OpenMS)   NetworkGetRequest (OpenMS)   
CompareTypeImpl< AAcid, char > (seqan)   NeutralLossDiffFilter (OpenMS)   
CompareTypeImpl< AAcid, uint8_t > (seqan)   NeutralLossMarker (OpenMS)   
ComplementFilter (OpenMS)   NLargest (OpenMS)   
ComplementMarker (OpenMS)   SignalToNoiseEstimatorMedianRapid::NoiseEstimator (OpenMS)   
CompleteLinkage (OpenMS)   _Alloc_base::NoLeakAlloc (KDTree)   
CompNovoIdentification (OpenMS)   NonNegativeLeastSquaresSolver (OpenMS)   
CompNovoIdentificationBase (OpenMS)   NoopMSDataConsumer (OpenMS)   
CompNovoIdentificationCID (OpenMS)   NoopMSDataWritingConsumer (OpenMS)   
CompNovoIonScoring (OpenMS)   Normalizer (OpenMS)   
CompNovoIonScoringBase (OpenMS)   FeatureFinderDefs::NoSuccessor (OpenMS)   
CompNovoIonScoringCID (OpenMS)   NotImplemented (OpenMS::Exception)   
Compomer (OpenMS)   NucleicAcidSearchEngine   
MRMFeatureQC::ComponentGroupPairQCs (OpenMS)   NucleicAcidSpectrumGenerator (OpenMS)   
MRMFeaturePicker::ComponentGroupParams (OpenMS)   NullPointer (OpenMS::Exception)   
MRMFeatureQC::ComponentGroupQCs (OpenMS)   MSNumpressCoder::NumpressConfig (OpenMS)   
MRMFeaturePicker::ComponentParams (OpenMS)   
  o  
MRMFeatureQC::ComponentQCs (OpenMS)   
Compound (OpenMS::TargetedExperimentHelper)   O18Labeler (OpenMS)   
SiriusMSFile::CompoundInfo (OpenMS)   OfflinePrecursorIonSelection (OpenMS)   
MetaboTargetedAssay::CompoundSpectrumPair (OpenMS)   OMS_TranslateTableAAToChar_ (seqan)   
CompressedInputSource (OpenMS)   OMS_TranslateTableByteToAA_ (seqan)   
ConfidenceScoring (OpenMS)   OMS_TranslateTableCharToAA_ (seqan)   
Configuration (OpenMS::TargetedExperimentHelper)   OMSSACSVFile (OpenMS)   
ConnectedComponent (OpenMS)   OMSSAXMLFile (OpenMS)   
ConsensusFeature (OpenMS)   OnDiscMSExperiment (OpenMS)   
ConsensusIDAlgorithm (OpenMS)   OpenMSLineEdit (OpenMS::Internal)   
ConsensusIDAlgorithmAverage (OpenMS)   OpenMSOSInfo (OpenMS::Internal)   
ConsensusIDAlgorithmBest (OpenMS)   OpenPepXLAlgorithm (OpenMS)   
ConsensusIDAlgorithmIdentity (OpenMS)   OpenPepXLLFAlgorithm (OpenMS)   
ConsensusIDAlgorithmPEPIons (OpenMS)   OpenSwath_Ind_Scores (OpenMS)   
ConsensusIDAlgorithmPEPMatrix (OpenMS)   OpenSwath_Scores (OpenMS)   
ConsensusIDAlgorithmRanks (OpenMS)   OpenSwath_Scores_Usage (OpenMS)   
ConsensusIDAlgorithmSimilarity (OpenMS)   OpenSwathCalibrationWorkflow (OpenMS)   
ConsensusIDAlgorithmWorst (OpenMS)   OpenSwathDataAccessHelper (OpenMS)   
ConsensusIsotopePattern (OpenMS)   OpenSwathHelper (OpenMS)   
ConsensusMap (OpenMS)   OpenSwathOSWWriter (OpenMS)   
ConsensusMapMergerAlgorithm (OpenMS)   OpenSwathScoring (OpenMS)   
ConsensusMapNormalizerAlgorithmMedian (OpenMS)   OpenSwathTSVWriter (OpenMS)   
ConsensusMapNormalizerAlgorithmQuantile (OpenMS)   OpenSwathWorkflow (OpenMS)   
ConsensusMapNormalizerAlgorithmThreshold (OpenMS)   OpenSwathWorkflowBase (OpenMS)   
ConsensusXMLFile (OpenMS)   OpenSwathWorkflowSonar (OpenMS)   
ConsoleUtils (OpenMS)   MS1FeatureMerger::OPERATOR_FEATURE_TR (OpenMS)   
NASequence::ConstIterator (OpenMS)   LCMS::OPERATOR_FeatureCompare (OpenMS)   
HashGrid::ConstIterator (OpenMS)   LCMS::OPERATOR_MZ (OpenMS)   
AASequence::ConstIterator (OpenMS)   OptimizePeakDeconvolution (OpenMS)   
ConstRefVector (OpenMS)   OptimizePick (OpenMS)   
ConstRefVector::ConstRefVectorConstIterator (OpenMS)   OptimizePick::OptPeakFunctor (OpenMS)   
ConstRefVector::ConstRefVectorIterator (OpenMS)   OPXLDataStructs (OpenMS)   
Contact (OpenMS::TargetedExperimentHelper)   OPXLHelper (OpenMS)   
ContactPerson (OpenMS)   OPXLSpectrumProcessingAlgorithms (OpenMS)   
ContactPersonVisualizer (OpenMS)   OSBinaryDataArray (OpenSwath)   
MSExperiment::ContainerAdd_ (OpenMS)   OSChromatogram (OpenSwath)   
MSExperiment::ContainerAdd_< ContainerValueType, false > (OpenMS)   OSChromatogramMeta (OpenSwath)   
MSExperiment::ContainerAdd_< ContainerValueType, true > (OpenMS)   OSSpectrum (OpenSwath)   
RawMSSignalSimulation::ContaminantInfo (OpenMS)   OSSpectrumMeta (OpenSwath)   
Contaminants (OpenMS)   OSWFile (OpenMS)   
Contaminants::ContaminantsSummary (OpenMS)   OutOfGrid (OpenMS::Exception)   
ContinuousWaveletTransform (OpenMS)   OutOfMemory (OpenMS::Exception)   
ContinuousWaveletTransformNumIntegration (OpenMS)   OutOfRange (OpenMS::Exception)   
ControlledVocabulary (OpenMS)   
  p  
ConversionError (OpenMS::Exception)   
ConvexHull2D (OpenMS)   PairComparatorFirstElement (OpenMS)   
CrossLinksDB (OpenMS)   PairComparatorFirstElementMore (OpenMS)   
OPXLDataStructs::CrossLinkSpectrumMatch (OpenMS)   PairComparatorSecondElement (OpenMS)   
CsiFingerIdMzTabWriter::CsiAdapterHit (OpenMS)   PairComparatorSecondElementMore (OpenMS)   
CsiFingerIdMzTabWriter::CsiAdapterIdentification (OpenMS)   PairMatcherFirstElement (OpenMS)   
CsiFingerIdMzTabWriter::CsiAdapterRun (OpenMS)   PairMatcherSecondElement (OpenMS)   
CsiFingerIdMzTabWriter (OpenMS)   PAM30MS (seqan)   
CsvFile (OpenMS)   Param (OpenMS)   
CSVWriter (OpenSwath)   ParamEditor (OpenMS)   
CubicSpline2d (OpenMS)   ParamEditorDelegate (OpenMS::Internal)   
CV (OpenMS::TargetedExperimentHelper)   Param::ParamEntry (OpenMS)   
CVMappingFile (OpenMS)   ParameterInformation (OpenMS)   
CVMappingRule (OpenMS)   Param::ParamIterator (OpenMS)   
CVMappings (OpenMS)   Param::ParamNode (OpenMS)   
CVMappingTerm (OpenMS)   ParamTree (OpenMS::Internal)   
CVReference (OpenMS)   ParamXMLFile (OpenMS)   
CVTerm (OpenMS)   ParamXMLHandler (OpenMS::Internal)   
ControlledVocabulary::CVTerm (OpenMS)   ParentMolecule (OpenMS::IdentificationDataInternal)   
SemanticValidator::CVTerm (OpenMS::Internal)   ParentMoleculeGroup (OpenMS::IdentificationDataInternal)   
CVTermList (OpenMS)   ParentMoleculeGrouping (OpenMS::IdentificationDataInternal)   
CVTermListInterface (OpenMS)   ParentPeakMower (OpenMS)   
  d  
ParseError (OpenMS::Exception)   
Pattern< TNeedle, FuzzyAC > (seqan)   
EGHFitter1D::Data (OpenMS)   PatternAuxData (seqan)   
EmgFitter1D::Data (OpenMS)   IMSIsotopeDistribution::Peak (OpenMS::ims)   
OptimizePeakDeconvolution::Data (OpenMS)   Peak1D (OpenMS)   
OptimizePick::Data (OpenMS)   Peak2D (OpenMS)   
TwoDOptimization::Data (OpenMS)   PeakAlignment (OpenMS)   
MzIdentMLDOMHandler::DatabaseInput (OpenMS::Internal)   PeptideHit::PeakAnnotation (OpenMS)   
DataFilters::DataFilter (OpenMS)   PeakIntegrator::PeakArea (OpenMS)   
DataFilterDialog (OpenMS)   PeakPickerCWT::PeakArea_ (OpenMS)   
DataFilters (OpenMS)   PeakIntegrator::PeakBackground (OpenMS)   
DataMatrix (OpenSwath)   PeakPickerHiRes::PeakBoundary (OpenMS)   
TransformationModel::DataPoint (OpenMS)   PeakCandidate (OpenMS)   
DataProcessing (OpenMS)   PeakPickerMaxima::PeakCandidate (OpenMS)   
DataProcessingSoftware (OpenMS::IdentificationDataInternal)   PeakFileOptions (OpenMS)   
DataProcessingStep (OpenMS::IdentificationDataInternal)   PeakIndex (OpenMS)   
DataProcessingVisualizer (OpenMS)   PeakIntegrator (OpenMS)   
DataQuery (OpenMS::IdentificationDataInternal)   PeakIntensityPredictor (OpenMS)   
DataValue (OpenMS)   PeakMarker (OpenMS)   
Date (OpenMS)   PeakPickerCWT (OpenMS)   
DateTime (OpenMS)   PeakPickerHiRes (OpenMS)   
DaTrait (OpenMS)   PeakPickerIterative (OpenMS)   
DBoundingBox (OpenMS)   PeakPickerMaxima (OpenMS)   
DBSearchParam (OpenMS::IdentificationDataInternal)   PeakPickerMRM (OpenMS)   
MzIdentMLDOMHandler::DBSequence (OpenMS::Internal)   PeakPickerSH (OpenMS)   
DeconvPeak (OpenMS)   PeakShape (OpenMS)   
DecoyHelper (OpenMS)   PeakIntegrator::PeakShapeMetrics (OpenMS)   
DefaultParamHandler (OpenMS)   PeakSpectrumCompareFunctor (OpenMS)   
Deisotoper (OpenMS)   PeakTypeEstimator (OpenMS)   
MultiplexDeltaMasses::DeltaMass (OpenMS)   PeakWidthEstimator (OpenMS)   
DeNovoAlgorithm (OpenMS)   PenaltyFactors (OpenMS::OptimizationFunctions)   
DeNovoIdentification (OpenMS)   PenaltyFactorsIntensity (OpenMS::OptimizationFunctions)   
DeNovoIonScoring (OpenMS)   PepNovoInfile (OpenMS)   
DeNovoPostScoring (OpenMS)   PepNovoOutfile (OpenMS)   
DepletedIDPool (OpenMS::Exception)   Peptide (OpenMS::TargetedExperimentHelper)   
SvmTheoreticalSpectrumGenerator::DescriptorSet (OpenMS)   Peptide (OpenSwath)   
DetectabilitySimulation (OpenMS)   PeptideAndProteinQuant (OpenMS)   
IDBoostGraph::dfs_ccsplit_visitor (OpenMS::Internal)   FeatureFinderIdentificationAlgorithm::PeptideCompare (OpenMS)   
DiaPrescore (OpenMS)   PeptideCompound (OpenMS::TargetedExperimentHelper)   
DIAScoring (OpenMS)   PeptideAndProteinQuant::PeptideData (OpenMS)   
Digestion (OpenMS)   IDFilter::PeptideDigestionFilter (OpenMS)   
DigestionEnzyme (OpenMS)   ProteinResolver::PeptideEntry (OpenMS)   
DigestionEnzymeDB (OpenMS)   MzIdentMLDOMHandler::PeptideEvidence (OpenMS::Internal)   
DigestionEnzymeProtein (OpenMS)   PeptideEvidence (OpenMS)   
DigestionEnzymeRNA (OpenMS)   PeptideHit (OpenMS)   
IDFilter::DigestionFilter (OpenMS)   PeptideHitVisualizer (OpenMS)   
DigestionVisualizer (OpenMS)   PeptideIdentification (OpenMS)   
DigestSimulation (OpenMS)   PeptideIdentificationVisualizer (OpenMS)   
DIntervalBase (OpenMS::Internal)   OPXLHelper::PeptideIDScoreComparator (OpenMS)   
DistanceMatrix (OpenMS)   PeptideIndexing (OpenMS)   
FeatureDistance::DistanceParams_ (OpenMS)   PeptideIndexing::PeptideProteinMatchInformation (OpenMS)   
DivisionByZero (OpenMS::Exception)   PeptideProteinResolution (OpenMS)   
DocumentIdentifier (OpenMS)   PeptideHit::PepXMLAnalysisResult (OpenMS)   
DocumentIdentifierVisualizer (OpenMS)   PepXMLFile (OpenMS)   
DocumentIDTagger (OpenMS)   PepXMLFileMascot (OpenMS)   
ListUtils::DoubleTolerancePredicate_ (OpenMS)   PercolatorFeatureSetHelper (OpenMS)   
DPeak (OpenMS)   PercolatorOutfile (OpenMS)   
DPosition (OpenMS)   CompNovoIdentificationBase::Permut (OpenMS)   
DRange (OpenMS)   PlainMSDataWritingConsumer (OpenMS)   
DTA2DFile (OpenMS)   PointerComparator (OpenMS)   
DTAFile (OpenMS)   PoseClusteringAffineSuperimposer (OpenMS)   
  e  
PoseClusteringShiftSuperimposer (OpenMS)   
Peak1D::PositionLess (OpenMS)   
EDTAFile (OpenMS)   Peak2D::PositionLess (OpenMS)   
EGHFitter1D (OpenMS)   PeakShape::PositionLess (OpenMS)   
EGHFitter1D::EGHFitterFunctor (OpenMS)   ChromatogramPeak::PositionLess (OpenMS)   
EGHModel (OpenMS)   Postcondition (OpenMS::Exception)   
EGHTraceFitter (OpenMS)   PosteriorErrorProbabilityModel (OpenMS::Math)   
EGHTraceFitter::EGHTraceFunctor (OpenMS)   PpmTrait (OpenMS)   
EmgFitter1D::EgmFitterFunctor (OpenMS)   PrecisionWrapper (OpenMS)   
Element (OpenMS)   Precondition (OpenMS::Exception)   
ElementDB (OpenMS)   Precursor (OpenMS)   
ElementNotFound (OpenMS::Exception)   PrecursorCorrection (OpenMS)   
ElutionModelFitter (OpenMS)   NucleicAcidSearchEngine::PrecursorInfo   
ElutionPeakDetection (OpenMS)   PrecursorIonSelection (OpenMS)   
EmgFitter1D (OpenMS)   PrecursorIonSelectionPreprocessing (OpenMS)   
EmgGradientDescent (OpenMS)   PrecursorMassComparator (OpenMS)   
EmgGradientDescent_friend (OpenMS)   PrecursorPurity (OpenMS)   
EmgModel (OpenMS)   PrecursorVisualizer (OpenMS)   
EmgScoring (OpenMS)   SimpleSVM::Prediction (OpenMS)   
EmpiricalFormula (OpenMS)   Prediction (OpenMS::TargetedExperimentHelper)   
XMLHandler::EndParsingSoftly (OpenMS::Internal)   FuzzyStringComparator::PrefixInfo_ (OpenMS)   
EnhancedTabBar (OpenMS)   OPXLDataStructs::PreprocessedPairSpectra (OpenMS)   
EnhancedTabBarWidgetInterface (OpenMS)   IDBoostGraph::PrintAddressVisitor (OpenMS::Internal)   
EnhancedWorkspace (OpenMS)   ProbablePhosphoSites (OpenMS)   
EnzymaticDigestion (OpenMS)   ProcessData (OpenMS)   
EnzymaticDigestionLogModel (OpenMS)   Product (OpenMS)   
Epifany   ProductModel (OpenMS)   
EqualInTolerance (OpenMS)   ProductModel< 2 > (OpenMS)   
EuclideanSimilarity (OpenMS)   ReactionMonitoringTransition::ProductMZLess (OpenMS)   
ExperimentalDesign (OpenMS)   ProductVisualizer (OpenMS)   
ExperimentalDesignFile (OpenMS)   ProgressLogger (OpenMS)   
ExperimentalSettings (OpenMS)   ProgressLogger::ProgressLoggerImpl (OpenMS)   
ExperimentalSettingsVisualizer (OpenMS)   ProteaseDB (OpenMS)   
ExtendedIsotopeFitter1D (OpenMS)   ProteaseDigestion (OpenMS)   
ExtendedIsotopeModel (OpenMS)   Protein (OpenMS::TargetedExperimentHelper)   
ChromatogramExtractorAlgorithm::ExtractionCoordinates (OpenMS)   Protein (OpenSwath)   
  f  
PeptideAndProteinQuant::ProteinData (OpenMS)   
ProteinResolver::ProteinEntry (OpenMS)   
Factory (OpenMS)   ProteinIdentification::ProteinGroup (OpenMS)   
FactoryBase (OpenMS)   ProteinHit (OpenMS)   
FailedAPICall (OpenMS::Exception)   ProteinHit::ProteinHitAccessionHash (OpenMS)   
FakeProcess (OpenMS)   ProteinHit::ProteinHitPtrAccessionHash (OpenMS)   
FalseDiscoveryRate (OpenMS)   ProteinHitVisualizer (OpenMS)   
FASTAContainer (OpenMS)   ProteinIdentification (OpenMS)   
FASTAContainer< TFI_File > (OpenMS)   ProteinIdentificationVisualizer (OpenMS)   
FASTAContainer< TFI_Vector > (OpenMS)   ProteinInference (OpenMS)   
FASTAFile::FASTAEntry (OpenMS)   OPXLDataStructs::ProteinProteinCrossLink (OpenMS)   
FASTAFile (OpenMS)   ProteinResolver (OpenMS)   
Feature (OpenMS)   ProtonDistributionModel (OpenMS)   
FeatureFinderIdentificationAlgorithm::FeatureCompare (OpenMS)   ProtXMLFile (OpenMS)   
AbsoluteQuantitationStandards::featureConcentration (OpenMS)   PScore (OpenMS)   
FeatureDeconvolution (OpenMS)   PSLPFormulation (OpenMS)   
FeatureDistance (OpenMS)   PSProteinInference (OpenMS)   
FeatureEditDialog (OpenMS)   PTMXMLFile (OpenMS)   
FeatureFileOptions (OpenMS)   PTMXMLHandler (OpenMS::Internal)   
FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides (OpenMS)   Publication (OpenMS::TargetedExperimentHelper)   
FeatureFinderIdentificationAlgorithm::FeatureFilterQuality (OpenMS)   IsobaricChannelExtractor::PuritySate_ (OpenMS)   
FeatureFinder (OpenMS)   PrecursorPurity::PurityScores (OpenMS)   
FeatureFinderAlgorithm (OpenMS)   
  q  
FeatureFinderAlgorithmIsotopeWavelet (OpenMS)   
FeatureFinderAlgorithmMRM (OpenMS)   QApplication   
FeatureFinderAlgorithmPicked (OpenMS)   QApplicationTOPP (OpenMS)   
FeatureFinderAlgorithmPickedHelperStructs (OpenMS)   QCBase (OpenMS)   
FeatureFinderAlgorithmSH (OpenMS)   QcMLFile (OpenMS)   
FeatureFinderAlgorithmSHCtrl (OpenMS)   QDate   
FeatureFinderDefs (OpenMS)   QDateTime   
FeatureFinderIdentificationAlgorithm (OpenMS)   QDialog   
FeatureFinderMultiplexAlgorithm (OpenMS)   QFileSystemWatcher   
FeatureFindingMetabo (OpenMS)   QGraphicsItem   
FeatureGroupingAlgorithm (OpenMS)   QGraphicsScene   
FeatureGroupingAlgorithmKD (OpenMS)   QGraphicsView   
FeatureGroupingAlgorithmLabeled (OpenMS)   QItemDelegate   
FeatureGroupingAlgorithmQT (OpenMS)   QLineEdit   
FeatureGroupingAlgorithmUnlabeled (OpenMS)   QListWidget   
FeatureHandle (OpenMS)   QMainWindow   
FeatureHandle::FeatureHandleMutable_ (OpenMS)   QMdiArea   
FeatureHypothesis (OpenMS)   QObject   
FeatureLCProfile (OpenMS)   QOpenGLFunctions_2_0   
FeatureMap (OpenMS)   QOpenGLWidget   
FeatureMapping (OpenMS)   QProcess   
FeatureOpenMS (OpenMS)   QTabBar   
FeatureMapping::FeatureToMs2Indices (OpenMS)   QTCluster (OpenMS)   
FeatureXMLFile (OpenMS)   QTClusterFinder (OpenMS)   
IsotopeWavelet::fi_ (OpenMS)   QTextEdit   
FIAMSDataProcessor (OpenMS)   QTreeWidget   
FIAMSScheduler (OpenMS)   QuadraticRegression (OpenMS::Math)   
FidHandler (OpenMS::Internal)   BaseFeature::QualityLess (OpenMS)   
File (OpenMS)   QcMLFile::QualityParameter (OpenMS)   
FileEmpty (OpenMS::Exception)   QuantitativeExperimentalDesign (OpenMS)   
FileHandler (OpenMS)   QueryMatchGroup (OpenMS::IdentificationDataInternal)   
FileMapping (OpenMS::Internal)   QWidget   
FileNameTooLong (OpenMS::Exception)   
  r  
FileNotFound (OpenMS::Exception)   
FileNotReadable (OpenMS::Exception)   Range (OpenMS)   
FileNotWritable (OpenMS::Exception)   RangeManager (OpenMS)   
FileTypes (OpenMS)   PeptideHit::RankLess (OpenMS)   
FileWatcher (OpenMS)   RANSAC (OpenMS::Math)   
FilterFunctor (OpenMS)   RansacModel (OpenMS::Math)   
FineIsotopePatternGenerator (OpenMS)   RansacModelLinear (OpenMS::Math)   
Fitter1D (OpenMS)   RansacModelQuadratic (OpenMS::Math)   
FloatDataArray (OpenMS::DataArrays)   RANSACParam (OpenMS::Math)   
FragmentMassError::FMEStatistics (OpenMS)   RateScorePair   
PeptideIndexing::FoundProteinFunctor (OpenMS)   ConsensusFeature::Ratio (OpenMS)   
RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ (OpenMS::Internal)   RawData (OpenMS)   
FragmentMassError (OpenMS)   RawMSSignalSimulation (OpenMS)   
FTPeakDetectController (OpenMS)   RawTandemMSSignalSimulation (OpenMS)   
FullSwathFileConsumer (OpenMS)   ReactionMonitoringTransition (OpenMS)   
GumbelMaxLikelihoodFitter::Functor (OpenMS::Math)   StringUtils::real_policies_NANfixed_ (OpenMS)   
FuzzyStringComparator (OpenMS)   RealMassDecomposer (OpenMS::ims)   
  g  
RegularSwathFileConsumer (OpenMS)   
Base64::Reinterpreter32_ (OpenMS)   
GammaDistributionFitter::GammaDistributionFitResult (OpenMS::Math)   Base64::Reinterpreter64_ (OpenMS)   
GammaDistributionFitter (OpenMS::Math)   RequiredParameterNotGiven (OpenMS::Exception)   
GaussFilter (OpenMS)   Residue (OpenMS)   
GaussFilterAlgorithm (OpenMS)   ResidueDB (OpenMS)   
GaussFitter::GaussFitResult (OpenMS::Math)   ResidueModification (OpenMS)   
GaussFitter (OpenMS::Math)   ProteinResolver::ResolverResult (OpenMS)   
GaussFitter1D (OpenMS)   MorpheusScore::Result (OpenMS)   
SignalToNoiseEstimator::GaussianEstimate (OpenMS)   DecoyHelper::Result (OpenMS)   
GaussModel (OpenMS)   RetentionTime (OpenMS::TargetedExperimentHelper)   
GaussTraceFitter (OpenMS)   ReverseComparator (OpenMS)   
GaussTraceFitter::GaussTraceFunctor (OpenMS)   RIALess   
LevMarqFitter1D::GenericFunctor (OpenMS)   Ribonucleotide (OpenMS)   
TraceFitter::GenericFunctor (OpenMS)   RibonucleotideDB (OpenMS)   
IDFilter::GetMatchingItems (OpenMS)   RichPeak2D (OpenMS)   
IDBoostGraph::GetPosteriorVisitor (OpenMS::Internal)   RIntegration   
ConfidenceScoring::GLM_ (OpenMS)   RNaseDB (OpenMS)   
GlobalExceptionHandler (OpenMS::Exception)   RNaseDigestion (OpenMS)   
glp_prob   RNPxlFragmentAnnotationHelper (OpenMS::Internal)   
GoodDiffFilter (OpenMS)   RNPxlMarkerIonExtractor (OpenMS)   
Gradient (OpenMS)   RNPxlModificationMassesResult (OpenMS)   
GradientVisualizer (OpenMS)   RNPxlModificationsGenerator (OpenMS)   
GridBasedCluster (OpenMS)   RNPxlReport (OpenMS)   
GridBasedClustering (OpenMS)   RNPxlReportRow (OpenMS)   
GridFeature (OpenMS)   RNPxlReportRowHeader (OpenMS)   
GridSearch (OpenMS)   ROCCurve (OpenMS::Math)   
GUIHelpers (OpenMS)   MzTabPeptideSectionRow::RowCompare (OpenMS)   
GUIProgressLoggerImpl (OpenMS)   MzTabProteinSectionRow::RowCompare (OpenMS)   
GumbelDistributionFitter::GumbelDistributionFitResult (OpenMS::Math)   MzTabPSMSectionRow::RowCompare (OpenMS)   
GumbelMaxLikelihoodFitter::GumbelDistributionFitResult (OpenMS::Math)   MzTabNucleicAcidSectionRow::RowCompare (OpenMS)   
GumbelDistributionFitter (OpenMS::Math)   MzTabOligonucleotideSectionRow::RowCompare (OpenMS)   
GumbelMaxLikelihoodFitter::GumbelDistributionFunctor (OpenMS::Math)   MzTabOSMSectionRow::RowCompare (OpenMS)   
GumbelMaxLikelihoodFitter (OpenMS::Math)   RTAlignment (OpenMS)   
GzipIfstream (OpenMS)   Peak2D::RTLess (OpenMS)   
GzipInputStream (OpenMS)   OSSpectrumMeta::RTLess (OpenSwath)   
  h  
MZTrafoModel::RTLess (OpenMS)   
ChromatogramPeak::RTLess (OpenMS)   
HasActivationMethod (OpenMS)   MSSpectrum::RTLess (OpenMS)   
IDFilter::HasDecoyAnnotation (OpenMS)   ConfidenceScoring::RTNorm_ (OpenMS)   
IDFilter::HasGoodScore (OpenMS)   FeatureFinderIdentificationAlgorithm::RTRegion (OpenMS)   
hash< OpenMS::String > (std)   RTSimulation (OpenMS)   
HashGrid (OpenMS)   AbsoluteQuantitationStandards::runConcentration (OpenMS)   
NucleicAcidSearchEngine::HasInvalidLength   RWrapper (OpenMS)   
IDFilter::HasMatchingAccession (OpenMS)   
  s  
IDFilter::HasMatchingAccessionUnordered (OpenMS)   
IDFilter::HasMaxMetaValue (OpenMS)   Sample (OpenMS)   
IDFilter::HasMaxRank (OpenMS)   ExperimentalDesign::SampleSection (OpenMS)   
HasMetaValue (OpenMS)   SampleTreatment (OpenMS)   
IDFilter::HasMetaValue (OpenMS)   SampleVisualizer (OpenMS)   
IDFilter::HasNoHits (OpenMS)   SaveImageDialog (OpenMS)   
HasPrecursorCharge (OpenMS)   SavitzkyGolayFilter (OpenMS)   
HasScanMode (OpenMS)   Scaler (OpenMS)   
HasScanPolarity (OpenMS)   Ms2SpectrumStats::ScanEvent (OpenMS)   
HDF5Connector (OpenMS)   PSLPFormulation::ScanLess (OpenMS)   
HiddenMarkovModel (OpenMS)   ScanWindow (OpenMS)   
Histogram (OpenMS::Math)   ScanWindowVisualizer (OpenMS)   
HistogramDialog (OpenMS)   ScoredProcessingResult (OpenMS::IdentificationDataInternal)   
HistogramWidget (OpenMS)   PeptideHit::ScoreLess (OpenMS)   
HMMState (OpenMS)   ProteinHit::ScoreLess (OpenMS)   
Host< Pattern< TNeedle, FuzzyAC > > (seqan)   ProteinHit::ScoreMore (OpenMS)   
Host< Pattern< TNeedle, FuzzyAC > const > (seqan)   PeptideHit::ScoreMore (OpenMS)   
HPLC (OpenMS)   ScoreToTgtDecLabelPairs (OpenMS)   
HPLCVisualizer (OpenMS)   ScoreType (OpenMS::IdentificationDataInternal)   
HyperScore (OpenMS)   ScoringMatrixData_< int, AminoAcid, AdaptedIdentity > (seqan)   
  i  
ScoringMatrixData_< int, AminoAcid, PAM30MS > (seqan)   
ProteinIdentification::SearchParameters (OpenMS)   
IBSpectraFile (OpenMS)   FeatureFinderAlgorithmPickedHelperStructs::Seed (OpenMS)   
IChromatogramsReader (OpenMS::Interfaces)   SeedListGenerator (OpenMS)   
IChromatogramsWriter (OpenMS::Interfaces)   MRMFeatureSelector::SelectorParameters (OpenMS)   
ICPLLabeler (OpenMS)   SemanticValidator (OpenMS::Internal)   
IDataFrameWriter (OpenSwath)   PrecursorIonSelection::SeqTotalScoreMore (OpenMS)   
IDBoostGraph (OpenMS::Internal)   SequenceLess   
IDConflictResolverAlgorithm (OpenMS)   PeptideHit::SequenceLessComparator (OpenMS)   
IDDecoyProbability (OpenMS)   SequestInfile (OpenMS)   
Identification (OpenMS)   SequestOutfile (OpenMS)   
IdentificationData (OpenMS)   IDBoostGraph::SetPosteriorVisitor (OpenMS::Internal)   
IdentificationDataConverter (OpenMS)   SHFeature (OpenMS)   
IdentificationHit (OpenMS)   SignalToNoiseEstimator (OpenMS)   
Ms2IdentificationRate::IdentificationRateData (OpenMS)   SignalToNoiseEstimatorMeanIterative (OpenMS)   
IdentifiedCompound (OpenMS::IdentificationDataInternal)   SignalToNoiseEstimatorMedian (OpenMS)   
IdentifiedSequence (OpenMS::IdentificationDataInternal)   SignalToNoiseEstimatorMedianRapid (OpenMS)   
IDFilter (OpenMS)   SignalToNoiseOpenMS (OpenMS)   
IDMapper (OpenMS)   SILACLabeler (OpenMS)   
IDMergerAlgorithm (OpenMS)   SimpleOpenMSSpectraFactory (OpenMS)   
IDRipper (OpenMS)   SimplePairFinder (OpenMS)   
IDScoreGetterSetter (OpenMS)   SimpleTSGXLMS::SimplePeak (OpenMS)   
IdXMLFile (OpenMS)   SimpleTSGXLMS::SimplePeakComparator (OpenMS)   
InclusionExclusionList::IEWindow (OpenMS)   SimpleSearchEngineAlgorithm (OpenMS)   
IFeature (OpenSwath)   SimpleSVM (OpenMS)   
IllegalArgument (OpenMS::Exception)   SimpleTSGXLMS (OpenMS)   
Map::IllegalKey (OpenMS)   SimProtein (OpenMS::SimTypes)   
IllegalPosition (OpenMS::Exception)   SimRandomNumberGenerator (OpenMS::SimTypes)   
IllegalSelfOperation (OpenMS::Exception)   ROCCurve::simsortdec (OpenMS::Math)   
IllegalTreeOperation (OpenMS::Exception)   SingleLinkage (OpenMS)   
ILPDCWrapper (OpenMS)   SingletonRegistry (OpenMS)   
IMRMFeature (OpenSwath)   SIPIncorporation   
IMSAlphabet (OpenMS::ims)   SIPPeptide   
IMSAlphabetParser (OpenMS::ims)   SiriusAdapterAlgorithm (OpenMS)   
IMSAlphabetTextParser (OpenMS::ims)   SiriusMzTabWriter::SiriusAdapterHit (OpenMS)   
IMSDataConsumer (OpenMS::Interfaces)   SiriusMzTabWriter::SiriusAdapterIdentification (OpenMS)   
IMSElement (OpenMS::ims)   SiriusMzTabWriter::SiriusAdapterRun (OpenMS)   
IMSIsotopeDistribution (OpenMS::ims)   SiriusFragmentAnnotation (OpenMS)   
IncludeExcludeTarget (OpenMS)   SiriusMSFile (OpenMS)   
InclusionExclusionList (OpenMS)   SiriusMzTabWriter (OpenMS)   
IncompatibleIterators (OpenMS::Exception)   SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects (OpenMS)   
IndexedMzMLDecoder (OpenMS)   SizeLess   
IndexedMzMLFileLoader (OpenMS)   ConsensusFeature::SizeLess (OpenMS)   
IndexedMzMLHandler (OpenMS::Internal)   SizeUnderflow (OpenMS::Exception)   
FeatureHandle::IndexLess (OpenMS)   Software (OpenMS)   
PSLPFormulation::IndexLess (OpenMS)   SoftwareVisualizer (OpenMS)   
IndexOverflow (OpenMS::Exception)   LPWrapper::SolverParam (OpenMS)   
PSLPFormulation::IndexTriple (OpenMS)   SONARScoring (OpenMS)   
IndexUnderflow (OpenMS::Exception)   SourceFile (OpenMS)   
INIFileEditorWindow (OpenMS)   SourceFileVisualizer (OpenMS)   
InIntensityRange (OpenMS)   Spawn (seqan)   
INIUpdater (OpenMS)   SpecArrayFile (OpenMS)   
InMSLevelRange (OpenMS)   SpectraMerger::SpectraDistance_ (OpenMS)   
InMzRange (OpenMS)   IDMapper::SpectraIdentificationState (OpenMS)   
InPrecursorMZRange (OpenMS)   SpectraIdentificationViewWidget (OpenMS)   
FuzzyStringComparator::InputLine (OpenMS)   SpectralMatch (OpenMS)   
InRTRange (OpenMS)   SpectralMatchScoreComparator (OpenMS)   
InspectInfile (OpenMS)   QCBase::SpectraMap (OpenMS)   
InspectOutfile (OpenMS)   SpectraMerger (OpenMS)   
Instrument (OpenMS)   SpectraSTSimilarityScore (OpenMS)   
Instrument (OpenMS::TargetedExperimentHelper)   SpectraViewWidget (OpenMS)   
InstrumentSettings (OpenMS)   Spectrum (OpenMS::Interfaces)   
InstrumentSettingsVisualizer (OpenMS)   Spectrum1DCanvas (OpenMS)   
InstrumentVisualizer (OpenMS)   Spectrum1DGoToDialog (OpenMS)   
ClusterFunctor::InsufficientInput (OpenMS)   Spectrum1DPrefDialog (OpenMS::Internal)   
IntegerDataArray (OpenMS::DataArrays)   Spectrum1DWidget (OpenMS)   
IntegerMassDecomposer (OpenMS::ims)   Spectrum2DCanvas (OpenMS)   
IntensityBalanceFilter (OpenMS)   Spectrum2DGoToDialog (OpenMS)   
IntensityIteratorWrapper (OpenMS::Internal)   Spectrum2DPrefDialog (OpenMS::Internal)   
Peak1D::IntensityLess (OpenMS)   Spectrum2DWidget (OpenMS)   
Peak2D::IntensityLess (OpenMS)   Spectrum3DCanvas (OpenMS)   
ChromatogramPeak::IntensityLess (OpenMS)   Spectrum3DOpenGLCanvas (OpenMS)   
InternalCalibration (OpenMS)   Spectrum3DPrefDialog (OpenMS::Internal)   
InterpolationModel (OpenMS)   Spectrum3DWidget (OpenMS)   
TransformationModelInterpolated::Interpolator (OpenMS)   SpectrumAccessOpenMS (OpenMS)   
Interpretation (OpenMS::TargetedExperimentHelper)   SpectrumAccessOpenMSCached (OpenMS)   
InvalidIterator (OpenMS::Exception)   SpectrumAccessOpenMSInMemory (OpenMS)   
InvalidParameter (OpenMS::Exception)   SpectrumAccessQuadMZTransforming (OpenMS)   
InvalidRange (OpenMS::Exception)   SpectrumAccessSqMass (OpenMS)   
InvalidSize (OpenMS::Exception)   SpectrumAccessTransforming (OpenMS)   
InvalidValue (OpenMS::Exception)   SpectrumAddition (OpenMS)   
IOException (OpenMS::Exception)   SpectrumAlignment (OpenMS)   
TOPPASToolVertex::IOInfo (OpenMS)   SpectrumAlignmentDialog (OpenMS)   
IonDetector (OpenMS)   SpectrumAlignmentScore (OpenMS)   
IonDetectorVisualizer (OpenMS)   SpectrumAnnotator (OpenMS)   
IonizationSimulation (OpenMS)   SpectrumCanvas (OpenMS)   
IonMobilityScoring (OpenMS)   SpectrumCheapDPCorr (OpenMS)   
CompNovoIonScoringBase::IonScore (OpenMS)   MzMLHandler::SpectrumData (OpenMS::Internal)   
DeNovoIonScoring::IonScore (OpenMS)   MzXMLHandler::SpectrumData (OpenMS::Internal)   
IonSource (OpenMS)   SpectrumIdentification (OpenMS)   
IonSourceVisualizer (OpenMS)   MzIdentMLDOMHandler::SpectrumIdentification (OpenMS::Internal)   
SvmTheoreticalSpectrumGenerator::IonType (OpenMS)   MzIdentMLDOMHandler::SpectrumIdentificationProtocol (OpenMS::Internal)   
ProteinResolver::ISDGroup (OpenMS)   SpectrumLookup (OpenMS)   
IsEmptySpectrum (OpenMS)   SpectrumMeta (OpenMS::Interfaces)   
IDScoreGetterSetter::IsHitType (OpenMS)   SpectrumMetaDataLookup::SpectrumMetaData (OpenMS)   
IDScoreGetterSetter::IsIDType (OpenMS)   SpectrumMetaDataLookup (OpenMS)   
ISignalToNoise (OpenSwath)   SpectrumPrecursorComparator (OpenMS)   
IsInCollisionEnergyRange (OpenMS)   SpectrumSettings (OpenMS)   
IsInIsolationWindow (OpenMS)   SpectrumSettingsVisualizer (OpenMS)   
IsInIsolationWindowSizeRange (OpenMS)   SpectrumWidget (OpenMS)   
IsobaricChannelExtractor (OpenMS)   SplineInterpolatedPeaks (OpenMS)   
IsobaricQuantitationMethod::IsobaricChannelInformation (OpenMS)   SplinePackage (OpenMS)   
IsobaricIsotopeCorrector (OpenMS)   SqliteConnector (OpenMS)   
IsobaricNormalizer (OpenMS)   SqMassFile::SqMassConfig (OpenMS)   
IsobaricQuantifier (OpenMS)   SqMassFile (OpenMS)   
IsobaricQuantifierStatistics (OpenMS)   SqrtMower (OpenMS)   
IsobaricQuantitationMethod (OpenMS)   squared_difference (KDTree)   
IsoSpecGeneratorWrapper (OpenMS)   squared_difference_counted (KDTree)   
IsoSpecOrderedGeneratorWrapper (OpenMS)   StablePairFinder (OpenMS)   
IsoSpecThresholdGeneratorWrapper (OpenMS)   PeptideAndProteinQuant::Statistics (OpenMS)   
IsoSpecThresholdWrapper (OpenMS)   QCBase::Status (OpenMS)   
IsoSpecTotalProbGeneratorWrapper (OpenMS)   SteinScottImproveScore (OpenMS)   
IsoSpecTotalProbWrapper (OpenMS)   StopWatch (OpenMS)   
IsoSpecWrapper (OpenMS)   FuzzyStringComparator::StreamElement_ (OpenMS)   
IsotopeCluster (OpenMS)   StreamHandler (OpenMS)   
IsotopeDiffFilter (OpenMS)   LogStreamBuf::StreamStruct (OpenMS::Logger)   
IsotopeDistribution (OpenMS)   String (OpenMS)   
IsotopeDistributionCache (OpenMS)   StringDataArray (OpenMS::DataArrays)   
IsotopeFitter1D (OpenMS)   StringListUtils (OpenMS)   
IsotopeMarker (OpenMS)   StringManager (OpenMS::Internal)   
IsotopeModel (OpenMS)   StringUtils (OpenMS)   
FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern (OpenMS)   StringView (OpenMS)   
IsotopePatternGenerator (OpenMS)   Summary (OpenMS)   
IsotopeWavelet (OpenMS)   SummaryStatistics (OpenMS::Math)   
IsotopeWaveletTransform (OpenMS)   SuperHirnParameters (OpenMS)   
IsotopicDist (OpenMS)   SuperHirnUtil (OpenMS)   
ISpectraReader (OpenMS::Interfaces)   SVMData (OpenMS)   
ISpectraWriter (OpenMS::Interfaces)   SvmTheoreticalSpectrumGenerator::SvmModelParameterSet (OpenMS)   
ISpectrumAccess (OpenSwath)   SvmTheoreticalSpectrumGenerator (OpenMS)   
IsZoomSpectrum (OpenMS)   SvmTheoreticalSpectrumGeneratorSet (OpenMS)   
NASequence::Iterator (OpenMS)   SvmTheoreticalSpectrumGeneratorTrainer (OpenMS)   
HashGrid::Iterator (OpenMS)   SVMWrapper (OpenMS)   
AASequence::Iterator (OpenMS)   SVOutStream (OpenMS)   
IteratorWrapper (OpenMS::IdentificationDataInternal)   SwathFile (OpenMS)   
ITransitionGroup (OpenSwath)   SwathMap (OpenSwath)   
ItraqConstants (OpenMS)   SwathMapMassCorrection (OpenMS)   
ItraqEightPlexQuantitationMethod (OpenMS)   SwathQC (OpenSwath)   
ItraqFourPlexQuantitationMethod (OpenMS)   SwathWindowLoader (OpenMS)   
ITRAQLabeler (OpenMS)   SysInfo (OpenMS)   
  j  
  t  
JavaInfo (OpenMS)   Tagger (OpenMS)   
  k  
Tagging (OpenMS)   
TaggingVisualizer (OpenMS)   
KDTree (KDTree)   TargetedExperiment (OpenSwath)   
KDTreeFeatureMaps (OpenMS)   TargetedExperiment (OpenMS)   
KDTreeFeatureNode (OpenMS)   TargetedSpectraExtractor (OpenMS)   
KroenikFile (OpenMS)   File::TemporaryFiles_ (OpenMS)   
  l  
TextFile (OpenMS)   
FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern (OpenMS)   
MultiplexDeltaMassesGenerator::Label (OpenMS)   TheoreticalSpectrumGenerationDialog (OpenMS)   
LabeledPairFinder (OpenMS)   TheoreticalSpectrumGenerator (OpenMS)   
LabelFreeLabeler (OpenMS)   TheoreticalSpectrumGeneratorXLMS (OpenMS)   
IDBoostGraph::LabelVisitor (OpenMS::Internal)   ThresholdMower (OpenMS)   
LayerData (OpenMS)   TIC (OpenMS)   
LayerStatisticsDialog (OpenMS)   TICFilter (OpenMS)   
LCElutionPeak (OpenMS)   TMTElevenPlexQuantitationMethod (OpenMS)   
LCMS (OpenMS)   TMTSixPlexQuantitationMethod (OpenMS)   
LCMSCData (OpenMS)   TMTSixteenPlexQuantitationMethod (OpenMS)   
LevMarqFitter1D (OpenMS)   TMTTenPlexQuantitationMethod (OpenMS)   
LexicographicComparator (OpenMS)   TOFCalibration (OpenMS)   
LibSVMEncoder (OpenMS)   ToolDescription (OpenMS::Internal)   
LightCompound (OpenSwath)   ToolDescriptionFile (OpenMS)   
LightModification (OpenSwath)   ToolDescriptionHandler (OpenMS::Internal)   
LightProtein (OpenSwath)   ToolDescriptionInternal (OpenMS::Internal)   
LightTargetedExperiment (OpenSwath)   ToolExternalDetails (OpenMS::Internal)   
LightTransition (OpenSwath)   ToolHandler (OpenMS)   
LinearInterpolation (OpenMS::Math)   ToolsDialog (OpenMS)   
LinearRegression (OpenMS::Math)   TOPPASBase (OpenMS)   
LinearRegressionWithoutIntercept (OpenMS::Math)   TOPPASEdge (OpenMS)   
LinearResampler (OpenMS)   TOPPASVertex::TOPPASFilenames (OpenMS)   
LinearResamplerAlign (OpenMS)   TOPPASInputFileDialog (OpenMS)   
ListEditor (OpenMS)   TOPPASInputFileListVertex (OpenMS)   
ListEditorDelegate (OpenMS::Internal)   TOPPASInputFilesDialog (OpenMS)   
ListTable (OpenMS::Internal)   TOPPASIOMappingDialog (OpenMS)   
ListUtils (OpenMS)   TOPPASLogWindow (OpenMS)   
LocalLinearMap::LLMParam (OpenMS)   TOPPASMergerVertex (OpenMS)   
LocalLinearMap (OpenMS)   TOPPASOutputFileListVertex (OpenMS)   
InternalCalibration::LockMass (OpenMS)   TOPPASOutputFilesDialog (OpenMS)   
LogStreamBuf::LogCacheStruct (OpenMS::Logger)   TOPPASResource (OpenMS)   
LogConfigHandler (OpenMS)   TOPPASResources (OpenMS)   
LogStream (OpenMS::Logger)   TOPPASScene (OpenMS)   
LogStreamBuf (OpenMS::Logger)   TOPPASSplitterVertex (OpenMS)   
LogStreamNotifier (OpenMS::Logger)   TOPPASTabBar (OpenMS)   
Looper (OpenMS::Internal)   TOPPASToolConfigDialog (OpenMS)   
Looper< grid_size, grid_size, EvalResult, Tuple, TupleTypes... > (OpenMS::Internal)   TOPPASToolVertex (OpenMS)   
Looper< param_index, grid_size, EvalResult, Tuple, FirstTupleType, TupleTypes... > (OpenMS::Internal)   TOPPASTreeView (OpenMS)   
SimpleTSGXLMS::LossIndex (OpenMS)   TOPPASVertex (OpenMS)   
TheoreticalSpectrumGeneratorXLMS::LossIndex (OpenMS)   TOPPASVertexNameDialog (OpenMS)   
LowessSmoothing (OpenMS)   TOPPASWidget (OpenMS)   
LPWrapper (OpenMS)   TOPPBase (OpenMS)   
PercolatorFeatureSetHelper::lq_PeptideEvidence (OpenMS)   TOPPGNPSExport   
PercolatorFeatureSetHelper::lq_ProteinHit (OpenMS)   TOPPOpenSwathBase (OpenMS)   
  m  
TOPPASScene::TOPPProcess (OpenMS)   
TOPPViewBase (OpenMS)   
Map (OpenMS)   TOPPViewIdentificationViewBehavior (OpenMS)   
MapAlignmentAlgorithmIdentification (OpenMS)   TOPPViewOpenDialog (OpenMS)   
MapAlignmentAlgorithmKD (OpenMS)   TOPPViewPrefDialog (OpenMS::Internal)   
MapAlignmentAlgorithmPoseClustering (OpenMS)   TOPPViewSpectraViewBehavior (OpenMS)   
MapAlignmentAlgorithmSpectrumAlignment (OpenMS)   PrecursorIonSelection::TotalScoreMore (OpenMS)   
MapAlignmentAlgorithmTreeGuided (OpenMS)   TraceFitter (OpenMS)   
MapAlignmentEvaluationAlgorithm (OpenMS)   Param::ParamIterator::TraceInfo (OpenMS)   
MapAlignmentEvaluationAlgorithmPrecision (OpenMS)   TraMLFile (OpenMS)   
MapAlignmentEvaluationAlgorithmRecall (OpenMS)   TraMLHandler (OpenMS::Internal)   
MapAlignmentTransformer (OpenMS)   TraMLProduct (OpenMS::TargetedExperimentHelper)   
MapConversion (OpenMS)   TraMLValidator (OpenMS::Internal)   
AccurateMassSearchEngine::MappingEntry_ (OpenMS)   IDDecoyProbability::Transformation_ (OpenMS)   
MappingParam (OpenMS::Internal)   TransformationDescription (OpenMS)   
ConsensusFeature::MapsLess (OpenMS)   TransformationModel (OpenMS)   
ModifiedPeptideGenerator::MapToResidueType (OpenMS)   TransformationModelBSpline (OpenMS)   
MarkerMower (OpenMS)   TransformationModelInterpolated (OpenMS)   
MascotGenericFile (OpenMS)   TransformationModelLinear (OpenMS)   
MascotInfile (OpenMS)   TransformationModelLowess (OpenMS)   
MascotRemoteQuery (OpenMS)   TransformationDescription::TransformationStatistics (OpenMS)   
MascotXMLFile (OpenMS)   TransformationXMLFile (OpenMS)   
MascotXMLHandler (OpenMS::Internal)   TransitionGroupOpenMS (OpenMS)   
MassAnalyzer (OpenMS)   TransitionHelper (OpenSwath)   
MassAnalyzerVisualizer (OpenMS)   TransitionPQPFile (OpenMS)   
MassDecomposer (OpenMS::ims)   TransitionTSVFile (OpenMS)   
MassDecomposition (OpenMS)   IsotopeWaveletTransform::TransSpectrum (OpenMS)   
MassDecompositionAlgorithm (OpenMS)   TransitionTSVFile::TSVTransition (OpenMS)   
MassExplainer (OpenMS)   TwoDOptimization::TwoDOptFunctor (OpenMS)   
IMSAlphabet::MassSortingCriteria_ (OpenMS::ims)   TwoDOptimization (OpenMS)   
MassTrace (OpenMS)   
  u  
FeatureFinderAlgorithmPickedHelperStructs::MassTrace (OpenMS)   
MasstraceCorrelator (OpenMS)   UnableToCalibrate (OpenMS::Exception)   
MassTraceDetection (OpenMS)   UnableToCreateFile (OpenMS::Exception)   
FeatureFinderAlgorithmPickedHelperStructs::MassTraces (OpenMS)   UnableToFit (OpenMS::Exception)   
TargetedSpectraExtractor::Match (OpenMS)   UnimodXMLFile (OpenMS)   
MatchedIterator (OpenMS)   UnimodXMLHandler (OpenMS::Internal)   
Matrix (OpenMS)   UniqueIdGenerator (OpenMS)   
MaxLikeliFitter1D (OpenMS)   UniqueIdIndexer (OpenMS)   
mean_and_stddev (OpenSwath)   UniqueIdInterface (OpenMS)   
SysInfo::MemUsage (OpenMS)   CVTerm::Unit (OpenMS)   
MessagePasserFactory (OpenMS::Internal)   UnnormalizedComparator (OpenMS)   
MetaboliteFeatureDeconvolution (OpenMS)   UnregisteredParameter (OpenMS::Exception)   
MetaboliteSpectralMatching (OpenMS)   UpdateCheck (OpenMS)   
MetaboTargetedAssay (OpenMS)   UTILProteomicsLFQ   
MetaDataBrowser (OpenMS)   
  v  
MetaInfo (OpenMS)   
MetaInfoDescription (OpenMS)   ValueSize< AAcid > (seqan)   
MetaInfoDescriptionVisualizer (OpenMS)   ValueTrait (OpenMS)   
MetaInfoInterface (OpenMS)   PSLPFormulation::VariableIndexLess (OpenMS)   
MetaInfoInterfaceUtils (OpenMS)   VecLowPrecision (OpenMS)   
MetaInfoRegistry (OpenMS)   VersionInfo::VersionDetails (OpenMS)   
MetaInfoVisualizer (OpenMS)   VersionInfo (OpenMS)   
MetaProSIPClustering   TOPPASVertex::VertexRoundPackage (OpenMS)   
MetaProSIPDecomposition   
  w  
MetaProSIPInterpolation   
MetaProSIPReporting   Weights (OpenMS::ims)   
MetaProSIPXICExtraction   WeightWrapper (OpenMS)   
LayerStatisticsDialog::MetaStatsValue_ (OpenMS)   InclusionExclusionList::WindowDistance_ (OpenMS)   
MinimumDistance (OpenMS)   WindowMower (OpenMS)   
MissedCleavages (OpenMS)   WrongParameterType (OpenMS::Exception)   
MissingInformation (OpenMS::Exception)   
  x  
MockFeature (OpenSwath)   
MockMRMFeature (OpenSwath)   XCorrArrayType (OpenSwath::Scoring)   
MockSignalToNoise (OpenSwath)   XFDRAlgorithm (OpenMS)   
MockTransitionGroup (OpenSwath)   OPXLDataStructs::XLPrecursor (OpenMS)   
TraceFitter::ModelData (OpenMS)   OPXLDataStructs::XLPrecursorComparator (OpenMS)   
ModelDescription (OpenMS)   XMassFile (OpenMS)   
Modification (OpenMS)   XMLFile (OpenMS::Internal)   
Peptide::Modification (OpenMS::TargetedExperimentHelper)   XMLHandler (OpenMS::Internal)   
ModificationDefinition (OpenMS)   XMLValidator (OpenMS)   
ModificationDefinitionsSet (OpenMS)   XQuestResultXMLFile (OpenMS)   
MzIdentMLDOMHandler::ModificationParam (OpenMS::Internal)   XQuestResultXMLHandler (OpenMS::Internal)   
ModificationsDB (OpenMS)   XQuestScores (OpenMS)   
ModificationVisualizer (OpenMS)   XTandemInfile (OpenMS)   
ModifiedNASequenceGenerator (OpenMS)   XTandemXMLFile (OpenMS)   
ModifiedPeptideGenerator (OpenMS)   
  z  
IdentificationData::ModifyMultiIndexAddProcessingStep (OpenMS)   
IdentificationData::ModifyMultiIndexAddScore (OpenMS)   ZhangSimilarityScore (OpenMS)   
IdentificationData::ModifyMultiIndexRemoveParentMatches (OpenMS)   ZlibCompression (OpenMS)   
MoleculeParentMatch (OpenMS::IdentificationDataInternal)   
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