38 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h> double getMassTolPpm()
Definition: SuperHirnParameters.h:356
double minFeatureMZ_
Definition: SuperHirnParameters.h:153
bool storeAllLowProbabilityMS2Scans_
Definition: SuperHirnParameters.h:196
double backgroundIntensityBinsMZ_
Definition: SuperHirnParameters.h:147
bool ms1FeatureClustering_
Definition: SuperHirnParameters.h:199
double minIntensity_
Definition: SuperHirnParameters.h:189
std::map< int, float > * getScanTRIndex()
Definition: SuperHirnParameters.h:304
double ms1PeakAreaTrResolution_
Definition: SuperHirnParameters.h:201
int getCentroidWindowWidth()
Definition: SuperHirnParameters.h:341
double initialTrTolerance_
Definition: SuperHirnParameters.h:202
static bool haveInstance_
Definition: SuperHirnParameters.h:144
double getMassTolDa()
Definition: SuperHirnParameters.h:361
int getMinNbClusterMembers()
Definition: SuperHirnParameters.h:299
double trTol_
Definition: SuperHirnParameters.h:194
float intensityThreshold_
Definition: SuperHirnParameters.h:158
bool isInitIsotopeDist()
Definition: SuperHirnParameters.h:406
double maxFeatureMZ_
Definition: SuperHirnParameters.h:154
bool ms1FeatureClustering()
Definition: SuperHirnParameters.h:401
double getMaxInterScanRetentionTimeDistance()
Definition: SuperHirnParameters.h:294
bool storeAllLowProbabilityMS2Scans()
Definition: SuperHirnParameters.h:391
double getMzTolPpm()
Definition: SuperHirnParameters.h:376
double getMaxTR()
Definition: SuperHirnParameters.h:259
double ms1TRResolution_
Definition: SuperHirnParameters.h:169
int minNbClusterMembers_
Definition: SuperHirnParameters.h:161
static SuperHirnParameters * instance()
Definition: SuperHirnParameters.h:223
double getMS1TRResolution()
Definition: SuperHirnParameters.h:331
double intensityCV_
Definition: SuperHirnParameters.h:185
float getIntensityThreshold()
Definition: SuperHirnParameters.h:284
int getMinFeatureChrg()
Definition: SuperHirnParameters.h:274
int backgroundIntensityBinsMinBinCount_
Definition: SuperHirnParameters.h:149
double backgroundIntensityBinsIntens_
Definition: SuperHirnParameters.h:148
double getInitialTrTolerance()
Definition: SuperHirnParameters.h:421
A facade for various Superhirn FeatureFinder classes. Use FeatureFinderAlgorithmSH instead...
Definition: FeatureFinderAlgorithmSHCtrl.h:55
int maxFeatureChrg_
Definition: SuperHirnParameters.h:156
double getPeptideProbabilityThreshold()
Definition: SuperHirnParameters.h:386
static SuperHirnParameters * instance_
Definition: SuperHirnParameters.h:143
int getMaxFeatureChrg()
Definition: SuperHirnParameters.h:279
double getMs1FeatureMergingTrTolerance()
Definition: SuperHirnParameters.h:426
double maxInterScanRetentionTimeDistance_
Definition: SuperHirnParameters.h:160
double getMinFeatureMZ()
Definition: SuperHirnParameters.h:264
bool centroidDataModus()
Definition: SuperHirnParameters.h:336
double toleranceMZ_
Definition: SuperHirnParameters.h:159
double getPpmToleranceForMZClustering()
Definition: SuperHirnParameters.h:436
double ppmToleranceForMZClustering_
Definition: SuperHirnParameters.h:205
double massTolDa_
Definition: SuperHirnParameters.h:188
double lowIntensityMSSignalThreshold_
Definition: SuperHirnParameters.h:207
int getBackgroundIntensityBinsMinBinCount()
Definition: SuperHirnParameters.h:249
bool centroidDataModus_
Definition: SuperHirnParameters.h:170
void setInitIsotopeDist()
Definition: SuperHirnParameters.h:411
SuperHirnParameters & operator=(const SuperHirnParameters &)
Definition: SuperHirnParameters.h:218
double getBackgroundIntensityBinsMZ()
Definition: SuperHirnParameters.h:239
double massTolPpm_
Definition: SuperHirnParameters.h:187
double getIntensityCV()
Definition: SuperHirnParameters.h:351
double getLowIntensityMSSignalThreshold()
Definition: SuperHirnParameters.h:441
double getMinTR()
Definition: SuperHirnParameters.h:254
double mzTolPpm_
Definition: SuperHirnParameters.h:193
double getIntensityFloor()
Definition: SuperHirnParameters.h:371
bool initIsotopeDist_
Definition: SuperHirnParameters.h:208
double getMinIntensity()
Definition: SuperHirnParameters.h:366
double peptideProbabilityThreshold_
Definition: SuperHirnParameters.h:195
double getToleranceMZ()
Definition: SuperHirnParameters.h:289
double getTrTol()
Definition: SuperHirnParameters.h:381
int minFeatureChrg_
Definition: SuperHirnParameters.h:155
std::map< int, float > scanTRIndex_
Definition: SuperHirnParameters.h:163
int centroidWindowWidth_
Definition: SuperHirnParameters.h:171
SuperHirn parameters singleton class containing all static configuration variables.
Definition: SuperHirnParameters.h:47
double maxTR_
Definition: SuperHirnParameters.h:152
double detectableIsotopeFactor_
Definition: SuperHirnParameters.h:184
double backgroundIntensityBinsTR_
Definition: SuperHirnParameters.h:146
double getBackgroundIntensityBinsIntens()
Definition: SuperHirnParameters.h:244
double getMaxFeatureMZ()
Definition: SuperHirnParameters.h:269
double getBackgroundIntensityBinsTR()
Definition: SuperHirnParameters.h:234
double ms1FeatureMergingTrTolerance_
Definition: SuperHirnParameters.h:203
double intensityFloor_
Definition: SuperHirnParameters.h:190
double getPercentageIntensityElutionBorderVariation()
Definition: SuperHirnParameters.h:431
double getDetectableIsotopeFactor()
Definition: SuperHirnParameters.h:346
bool createFeatureElutionProfiles()
Definition: SuperHirnParameters.h:396
double getMs1PeakAreaTrResolution()
Definition: SuperHirnParameters.h:416
double percentageIntensityElutionBorderVariation_
Definition: SuperHirnParameters.h:204
double minTR_
Definition: SuperHirnParameters.h:151
bool createFeatureElutionProfiles_
Definition: SuperHirnParameters.h:198
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46