95 template <
class MetaContainer>
97 std::unary_function<MetaContainer, bool>
131 template <
class SpectrumType>
133 std::unary_function<SpectrumType, bool>
144 InRTRange(
double min,
double max,
bool reverse =
false) :
152 double tmp = s.
getRT();
169 template <
class SpectrumType>
171 std::unary_function<SpectrumType, bool>
205 template <
class SpectrumType>
207 std::unary_function<SpectrumType, bool>
240 template <
class SpectrumType>
242 std::unary_function<SpectrumType, bool>
276 template <
class SpectrumType>
278 std::unary_function<SpectrumType, bool>
307 template <
class SpectrumType>
309 std::unary_function<SpectrumType, bool>
341 template <
class SpectrumType>
343 std::unary_function<SpectrumType, bool>
362 for (std::set<Precursor::ActivationMethod>::const_iterator it_a = it->getActivationMethods().begin();
363 it_a != it->getActivationMethods().end();
393 template <
class SpectrumType>
395 std::unary_function<SpectrumType, bool>
416 if (!(mz_left_ <= it->getMZ() && it->getMZ() <=
mz_right_))
442 template <
class SpectrumType>
444 std::unary_function<SpectrumType, bool>
464 Int tmp = it->getCharge();
487 template <
class PeakType>
489 std::unary_function<PeakType, bool>
500 InMzRange(
double min,
double max,
bool reverse =
false) :
525 template <
class PeakType>
527 std::unary_function<PeakType, bool>
562 template <
class SpectrumType>
564 std::unary_function<SpectrumType, bool>
586 bool hasCollisionEnergy =
false;
589 if (it->metaValueExists(
"collision energy"))
591 hasCollisionEnergy =
true;
592 double cE = it->getMetaValue(
"collision energy");
598 if (!hasCollisionEnergy)
return false;
615 template <
class SpectrumType>
617 std::unary_function<SpectrumType, bool>
642 const double isolationWindowSize = it->getIsolationWindowUpperOffset() + it->getIsolationWindowLowerOffset();
661 template <
class SpectrumType>
663 std::unary_function<SpectrumType, bool>
688 if (it->getIsolationWindowLowerOffset() == 0 || it->getIsolationWindowUpperOffset() == 0)
690 OPENMS_LOG_WARN <<
"IsInIsolationWindow(): Lower/Upper Offset for Precursor Isolation Window is Zero! " <<
691 "Filtering will probably be too strict (unless you hit the exact precursor m/z)!" << std::endl;
693 const double lower_mz = it->getMZ() - it->getIsolationWindowLowerOffset();
694 std::vector<double>::const_iterator it_mz = std::lower_bound(
vec_mz_.begin(),
vec_mz_.end(), lower_mz);
697 const double upper_mz = it->getMZ() + it->getIsolationWindowUpperOffset();
698 isIn |= (*it_mz <= upper_mz);
double mz_left_
Definition: RangeUtils.h:428
double min_energy_
Definition: RangeUtils.h:605
Predicate that determines if a class has a certain metavalue.
Definition: RangeUtils.h:96
Predicate that determines if the width of the isolation window of an MSn spectrum is in the given ran...
Definition: RangeUtils.h:616
A more convenient string class.
Definition: String.h:58
IsZoomSpectrum(bool reverse=false)
Constructor.
Definition: RangeUtils.h:318
StringList methods_
Definition: RangeUtils.h:380
double min_
Definition: RangeUtils.h:514
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:186
IntensityType getIntensity() const
Definition: Peak2D.h:166
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:411
bool reverse_
Definition: RangeUtils.h:159
bool reverse_
Definition: RangeUtils.h:430
ScanMode getScanMode() const
returns the scan mode
HasPrecursorCharge(const IntList &charges, bool reverse=false)
Constructor.
Definition: RangeUtils.h:454
HasScanPolarity(Int polarity, bool reverse=false)
Constructor.
Definition: RangeUtils.h:252
Predicate that determines if a spectrum is empty.
Definition: RangeUtils.h:277
A 2-dimensional raw data point or peak.
Definition: Peak2D.h:54
std::vector< Int > IntList
Vector of signed integers.
Definition: ListUtils.h:55
Predicate that determines if a spectrum lies inside/outside a specific MS level set.
Definition: RangeUtils.h:170
static const std::string NamesOfActivationMethod[SIZE_OF_ACTIVATIONMETHOD]
Names of activation methods.
Definition: Precursor.h:94
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:459
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:222
bool reverse_
Definition: RangeUtils.h:329
bool reverse_
Definition: RangeUtils.h:652
IsEmptySpectrum(bool reverse=false)
Constructor.
Definition: RangeUtils.h:286
Int polarity_
Definition: RangeUtils.h:264
Predicate that determines if a peak lies inside/outside a specific m/z range.
Definition: RangeUtils.h:488
IntList levels_
Definition: RangeUtils.h:194
std::vector< double > vec_mz_
Definition: RangeUtils.h:707
Predicate that determines if a spectrum was generated using any activation method given in the constr...
Definition: RangeUtils.h:342
Predicate that determines if a spectrum has a certain scan polarity.
Definition: RangeUtils.h:241
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:257
Predicate that determines if a spectrum lies inside/outside a specific retention time range...
Definition: RangeUtils.h:132
bool reverse_
Definition: RangeUtils.h:552
Predicate that determines if an MSn spectrum was generated with a collision energy in the given range...
Definition: RangeUtils.h:563
HasMetaValue(String metavalue, bool reverse=false)
Constructor.
Definition: RangeUtils.h:106
Int mode_
Definition: RangeUtils.h:229
static bool contains(const std::vector< T > &container, const E &elem)
Checks whether the element elem is contained in the given container.
Definition: ListUtils.h:146
Predicate that determines if a spectrum has a certain precursor charge as given in the constructor li...
Definition: RangeUtils.h:443
const std::vector< Precursor > & getPrecursors() const
returns a const reference to the precursors
bool operator()(const MetaContainer &s) const
Definition: RangeUtils.h:111
bool reverse_
Definition: RangeUtils.h:265
const InstrumentSettings & getInstrumentSettings() const
returns a const reference to the instrument settings of the current spectrum
Predicate that determines if a spectrum is a zoom (enhanced resolution) spectrum. ...
Definition: RangeUtils.h:308
IsInCollisionEnergyRange(double min, double max, bool reverse=false)
Constructor.
Definition: RangeUtils.h:574
IsInIsolationWindowSizeRange(double min_size, double max_size, bool reverse=false)
Constructor.
Definition: RangeUtils.h:628
double max_size_
Definition: RangeUtils.h:651
bool getZoomScan() const
return if this scan is a zoom (enhanced resolution) scan
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:150
Predicate that determines if the isolation window covers ANY of the given m/z values.
Definition: RangeUtils.h:662
InMSLevelRange(const IntList &levels, bool reverse=false)
Constructor.
Definition: RangeUtils.h:181
#define OPENMS_LOG_WARN
Macro if a warning, a piece of information which should be read by the user, should be logged...
Definition: LogStream.h:460
bool reverse_
Definition: RangeUtils.h:195
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67
bool reverse_
Definition: RangeUtils.h:474
InMzRange(double min, double max, bool reverse=false)
Constructor.
Definition: RangeUtils.h:500
InRTRange(double min, double max, bool reverse=false)
Constructor.
Definition: RangeUtils.h:144
Predicate that determines if a peak lies inside/outside a specific intensity range.
Definition: RangeUtils.h:526
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:580
double mz_right_
Definition: RangeUtils.h:429
HasActivationMethod(const StringList &methods, bool reverse=false)
Constructor.
Definition: RangeUtils.h:353
double min_size_
Definition: RangeUtils.h:651
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
IntList charges_
Definition: RangeUtils.h:473
bool reverse_
Definition: RangeUtils.h:381
bool reverse_
Definition: RangeUtils.h:708
double min_
Definition: RangeUtils.h:551
double max_
Definition: RangeUtils.h:158
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:358
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:634
IonSource::Polarity getPolarity() const
returns the polarity
bool reverse_
Definition: RangeUtils.h:120
bool operator()(const PeakType &p) const
Definition: RangeUtils.h:543
bool reverse_
Definition: RangeUtils.h:606
bool find(TFinder &finder, const Pattern< TNeedle, FuzzyAC > &me, PatternAuxData< TNeedle > &dh)
Definition: AhoCorasickAmbiguous.h:884
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:680
bool reverse_
Definition: RangeUtils.h:297
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
UInt getMSLevel() const
Returns the MS level.
String metavalue_key_
Definition: RangeUtils.h:119
InIntensityRange(double min, double max, bool reverse=false)
Constructor.
Definition: RangeUtils.h:537
bool reverse_
Definition: RangeUtils.h:515
bool operator()(const PeakType &p) const
Definition: RangeUtils.h:506
Predicate that determines if a spectrum has a certain scan mode.
Definition: RangeUtils.h:206
IsInIsolationWindow(std::vector< double > vec_mz, bool reverse=false)
Constructor.
Definition: RangeUtils.h:673
PositionType const & getPosition() const
Non-mutable access to the position.
Definition: Peak2D.h:178
InPrecursorMZRange(const double &mz_left, const double &mz_right, bool reverse=false)
Constructor.
Definition: RangeUtils.h:405
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:290
HasScanMode(Int mode, bool reverse=false)
Constructor.
Definition: RangeUtils.h:217
Predicate that determines if a spectrum's precursor is within a certain m/z range.
Definition: RangeUtils.h:394
bool operator()(const SpectrumType &s) const
Definition: RangeUtils.h:322
double max_
Definition: RangeUtils.h:514
double max_energy_
Definition: RangeUtils.h:605
double min_
Definition: RangeUtils.h:158
double max_
Definition: RangeUtils.h:551
bool reverse_
Definition: RangeUtils.h:230