OpenMS  2.5.0
INIUpdater

Update INI and TOPPAS files from previous versions of OpenMS/TOPP

This tool can update old INI files and make them

The new INI files can be created in-place (with -i option), which will overwrite the existing file, but create a backup copy with [filename]_[version].ini, e.g.

INIUpdater -in FileFilter.ini -i

will create a file FileFilter_1.8.ini if the old ini version was 1.8.

No backup will be created if -out is used, as the original files are not touched (unless you name them the same).

The command line parameters of this tool are:


INIUpdater -- Update INI and TOPPAS files to new OpenMS version.

Full documentation: http://www.openms.de/documentation/UTILS_INIUpdater.html

Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

To cite OpenMS:

  Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.



Usage:

  INIUpdater <options>



Options (mandatory options marked with '*'):

  -in <files>*       INI/TOPPAS files that need updating. (valid formats: 'ini', 'toppas')

  -i                 In-place: Override given INI/TOPPAS files with new content (not compatible with -out)

  -out <files>       Optional list of output files (not compatible with -i). (valid formats: 'ini', 'toppas')

                     

Common UTIL options:

  -ini <file>        Use the given TOPP INI file

  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')

  -write_ini <file>  Writes the default configuration file

  --help             Shows options

  --helphelp         Shows all options (including advanced)



INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+INIUpdaterUpdate INI and TOPPAS files to new OpenMS version.
version2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1Instance '1' section for 'INIUpdater'
in[] INI/TOPPAS files that need updating.input file*.ini,*.toppas
ifalse in-place: Override given INI/TOPPAS files with new content (not compatible with -out)true,false
out[] Optional list of output files (not compatible with -i).output file*.ini,*.toppas
log Name of log file (created only when specified)
debug0 Sets the debug level
threads1 Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse Disables progress logging to command linetrue,false
forcefalse Overwrite tool specific checks.true,false
testfalse Enables the test mode (needed for internal use only)true,false