38 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h> double getMzTolPpm()
Definition: SuperHirnParameters.h:376
double maxInterScanRetentionTimeDistance_
Definition: SuperHirnParameters.h:160
double getMinFeatureMZ()
Definition: SuperHirnParameters.h:264
double getMaxTR()
Definition: SuperHirnParameters.h:259
bool centroidDataModus()
Definition: SuperHirnParameters.h:336
static SuperHirnParameters * instance()
Definition: SuperHirnParameters.h:223
double intensityCV_
Definition: SuperHirnParameters.h:185
double ppmToleranceForMZClustering_
Definition: SuperHirnParameters.h:205
int getBackgroundIntensityBinsMinBinCount()
Definition: SuperHirnParameters.h:249
int backgroundIntensityBinsMinBinCount_
Definition: SuperHirnParameters.h:149
double backgroundIntensityBinsIntens_
Definition: SuperHirnParameters.h:148
SuperHirnParameters & operator=(const SuperHirnParameters &)
Definition: SuperHirnParameters.h:218
double getInitialTrTolerance()
Definition: SuperHirnParameters.h:421
int maxFeatureChrg_
Definition: SuperHirnParameters.h:156
double massTolPpm_
Definition: SuperHirnParameters.h:187
double getPeptideProbabilityThreshold()
Definition: SuperHirnParameters.h:386
double getMinTR()
Definition: SuperHirnParameters.h:254
bool initIsotopeDist_
Definition: SuperHirnParameters.h:208
double getMinIntensity()
Definition: SuperHirnParameters.h:366
double getMs1FeatureMergingTrTolerance()
Definition: SuperHirnParameters.h:426
double peptideProbabilityThreshold_
Definition: SuperHirnParameters.h:195
double getTrTol()
Definition: SuperHirnParameters.h:381
int centroidWindowWidth_
Definition: SuperHirnParameters.h:171
double maxTR_
Definition: SuperHirnParameters.h:152
double backgroundIntensityBinsTR_
Definition: SuperHirnParameters.h:146
double toleranceMZ_
Definition: SuperHirnParameters.h:159
double getPpmToleranceForMZClustering()
Definition: SuperHirnParameters.h:436
double massTolDa_
Definition: SuperHirnParameters.h:188
double lowIntensityMSSignalThreshold_
Definition: SuperHirnParameters.h:207
bool centroidDataModus_
Definition: SuperHirnParameters.h:170
void setInitIsotopeDist()
Definition: SuperHirnParameters.h:411
double getBackgroundIntensityBinsMZ()
Definition: SuperHirnParameters.h:239
double getMaxFeatureMZ()
Definition: SuperHirnParameters.h:269
double getBackgroundIntensityBinsTR()
Definition: SuperHirnParameters.h:234
double getIntensityCV()
Definition: SuperHirnParameters.h:351
double getPercentageIntensityElutionBorderVariation()
Definition: SuperHirnParameters.h:431
bool createFeatureElutionProfiles()
Definition: SuperHirnParameters.h:396
double getLowIntensityMSSignalThreshold()
Definition: SuperHirnParameters.h:441
double mzTolPpm_
Definition: SuperHirnParameters.h:193
double getIntensityFloor()
Definition: SuperHirnParameters.h:371
double percentageIntensityElutionBorderVariation_
Definition: SuperHirnParameters.h:204
double minTR_
Definition: SuperHirnParameters.h:151
double getToleranceMZ()
Definition: SuperHirnParameters.h:289
int minFeatureChrg_
Definition: SuperHirnParameters.h:155
std::map< int, float > scanTRIndex_
Definition: SuperHirnParameters.h:163
double detectableIsotopeFactor_
Definition: SuperHirnParameters.h:184
double getMassTolPpm()
Definition: SuperHirnParameters.h:356
A facade for various Superhirn FeatureFinder classes. Use FeatureFinderAlgorithmSH instead...
Definition: FeatureFinderAlgorithmSHCtrl.h:55
double getBackgroundIntensityBinsIntens()
Definition: SuperHirnParameters.h:244
double minFeatureMZ_
Definition: SuperHirnParameters.h:153
bool storeAllLowProbabilityMS2Scans_
Definition: SuperHirnParameters.h:196
double ms1FeatureMergingTrTolerance_
Definition: SuperHirnParameters.h:203
double intensityFloor_
Definition: SuperHirnParameters.h:190
double getDetectableIsotopeFactor()
Definition: SuperHirnParameters.h:346
double getMs1PeakAreaTrResolution()
Definition: SuperHirnParameters.h:416
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
bool createFeatureElutionProfiles_
Definition: SuperHirnParameters.h:198
bool ms1FeatureClustering_
Definition: SuperHirnParameters.h:199
SuperHirn parameters singleton class containing all static configuration variables.
Definition: SuperHirnParameters.h:47
int getCentroidWindowWidth()
Definition: SuperHirnParameters.h:341
double initialTrTolerance_
Definition: SuperHirnParameters.h:202
double backgroundIntensityBinsMZ_
Definition: SuperHirnParameters.h:147
int getMinNbClusterMembers()
Definition: SuperHirnParameters.h:299
double trTol_
Definition: SuperHirnParameters.h:194
double minIntensity_
Definition: SuperHirnParameters.h:189
float intensityThreshold_
Definition: SuperHirnParameters.h:158
bool isInitIsotopeDist()
Definition: SuperHirnParameters.h:406
double getMaxInterScanRetentionTimeDistance()
Definition: SuperHirnParameters.h:294
bool storeAllLowProbabilityMS2Scans()
Definition: SuperHirnParameters.h:391
double ms1TRResolution_
Definition: SuperHirnParameters.h:169
int minNbClusterMembers_
Definition: SuperHirnParameters.h:161
std::map< int, float > * getScanTRIndex()
Definition: SuperHirnParameters.h:304
double getMS1TRResolution()
Definition: SuperHirnParameters.h:331
double ms1PeakAreaTrResolution_
Definition: SuperHirnParameters.h:201
float getIntensityThreshold()
Definition: SuperHirnParameters.h:284
static bool haveInstance_
Definition: SuperHirnParameters.h:144
double getMassTolDa()
Definition: SuperHirnParameters.h:361
int getMinFeatureChrg()
Definition: SuperHirnParameters.h:274
double maxFeatureMZ_
Definition: SuperHirnParameters.h:154
bool ms1FeatureClustering()
Definition: SuperHirnParameters.h:401
static SuperHirnParameters * instance_
Definition: SuperHirnParameters.h:143
int getMaxFeatureChrg()
Definition: SuperHirnParameters.h:279