67 defaults_.
setValue(
"cutoff", 0.0,
"Low intensity cutoff of the model. Peaks below this intensity are not considered part of the model.");
85 if (&source ==
this)
return *
this;
109 template <
typename PeakType>
118 template <
class PeakIterator>
148 for (
typename SamplesType::const_iterator it = samples.begin(); it != samples.end(); ++it)
150 os << *it << std::endl;
virtual bool isContained(const PositionType &pos) const
check if position pos is part of the model regarding the models cut-off.
Definition: BaseModel.h:100
double IntensityType
Definition: BaseModel.h:56
Param defaults_
Container for default parameters. This member should be filled in the constructor of derived classes!...
Definition: DefaultParamHandler.h:156
DPeak< D >::Type PeakType
Definition: BaseModel.h:59
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:91
DPosition< D > PositionType
Definition: BaseModel.h:58
void updateMembers_() override
This method is used to update extra member variables at the end of the setParameters() method...
Definition: BaseModel.h:157
virtual void getSamples(std::ostream &os)
fill stream with reasonable set of samples from the model (i.e. for printing)
Definition: BaseModel.h:144
const DataValue & getValue(const String &key) const
Returns a value of a parameter.
void fillIntensity(PeakType &peak) const
Convenience function to set the intensity of a peak to the predicted intensity at its current positio...
Definition: BaseModel.h:110
BaseModel(const BaseModel &source)
copy constructor
Definition: BaseModel.h:71
virtual IntensityType getIntensity(const PositionType &pos) const =0
access model predicted intensity at position pos
Abstract base class for all D-dimensional models.
Definition: BaseModel.h:50
~BaseModel() override
Destructor.
Definition: BaseModel.h:78
Metafunction to choose among Peak1D respectively Peak2D through a template argument.
Definition: DPeak.h:60
RawDataVector::iterator PeakIterator
Profile data iterator type.
Definition: OptimizePick.h:52
void fillIntensities(PeakIterator begin, PeakIterator end) const
Convenience function that applies fillIntensity() to an iterator range.
Definition: BaseModel.h:119
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
std::vector< PeakType > SamplesType
Definition: BaseModel.h:60
void setValue(const String &key, const DataValue &value, const String &description="", const StringList &tags=StringList())
Sets a value.
virtual void getSamples(SamplesType &cont) const =0
get reasonable set of samples from the model (i.e. for printing)
virtual IntensityType getCutOff() const
get cutoff value
Definition: BaseModel.h:128
virtual BaseModel & operator=(const BaseModel &source)
assignment operator
Definition: BaseModel.h:83
virtual DefaultParamHandler & operator=(const DefaultParamHandler &rhs)
Assignment operator.
BaseModel()
Default constructor.
Definition: BaseModel.h:64
IntensityType cut_off_
Definition: BaseModel.h:155
static void registerChildren()
register all derived classes here (implemented in file BaseModel_impl.h)
double CoordinateType
Definition: BaseModel.h:57
Param param_
Container for current parameters.
Definition: DefaultParamHandler.h:149
virtual void setCutOff(IntensityType cut_off)
set cutoff value
Definition: BaseModel.h:134