OpenMS  2.5.0
TransformationEvaluation

Applies a transformation to a range of values and records the results.

This is useful for plotting transformations for quality assessment etc.

The command line parameters of this tool are:


TransformationEvaluation -- Applies a transformation to a range of values

Full documentation: http://www.openms.de/documentation/UTILS_TransformationEvaluation.html

Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

To cite OpenMS:

  Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.



Usage:

  TransformationEvaluation <options>



Options (mandatory options marked with '*'):

  -in <file>*        Input file containing the transformation description (valid formats: 'trafoXML')

  -out <file>        Output file containing original and transformed values; if empty, output is written to 

                     the screen (valid formats: 'trafoXML')

  -min <value>       Minimum value to transform (default: '0.0')

  -max <value>       Maximum value to transform (if at or below 'min', select a suitable maximum based on 

                     the transformation description) (default: '0.0')

  -step <value>      Step size between 'min' and 'max' (default: '1.0' min: '0.001')

                     

Common UTIL options:

  -ini <file>        Use the given TOPP INI file

  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')

  -write_ini <file>  Writes the default configuration file

  --help             Shows options

  --helphelp         Shows all options (including advanced)



INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+TransformationEvaluationApplies a transformation to a range of values
version2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1Instance '1' section for 'TransformationEvaluation'
in Input file containing the transformation descriptioninput file*.trafoXML
out Output file containing original and transformed values; if empty, output is written to the screenoutput file*.trafoXML
min0.0 Minimum value to transform
max0.0 Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)
step1.0 Step size between 'min' and 'max'0.001:∞
log Name of log file (created only when specified)
debug0 Sets the debug level
threads1 Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse Disables progress logging to command linetrue,false
forcefalse Overwrite tool specific checks.true,false
testfalse Enables the test mode (needed for internal use only)true,false